Re: [HCP-Users] OneStepResampling

2016-03-31 Thread Juan Sanchez
Yes we have run several subjects with both phase directions successfully. From: Harms, Michael [mha...@wustl.edu] Sent: Thursday, March 31, 2016 2:51 PM To: Juan Sanchez; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] OneStepResampling Did you make sure to

Re: [HCP-Users] OneStepResampling

2016-03-31 Thread Harms, Michael
Did you make sure to change the phase encoding direction appropriately for the one that is appearing misaligned? cheers, -MH --  Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washin

[HCP-Users] OneStepResampling

2016-03-31 Thread Juan Sanchez
We have been processing multiband data using the "GEFIELDMAP" DistortionCorrection. We are experiencing a problem in what seems to be the OneStepResampling The warping of the scout (Sbref) in one Phase direction leads to very good EPI - T1 coregistration however the warping of the scout in the o

Re: [HCP-Users] structrual extended package for HCP_900 subjects on aws

2016-03-31 Thread Denis-Alexander Engemann
It turns out that the structural extended preprocessing package is not available for the new subjects. Is there any fix planned for this or is there a way to at least get some of the outputs from 'surf' and 'mri'? Denis On Tue, Mar 29, 2016 at 10:35 AM Denis-Alexander Engemann < denis.engem...@g