Re: [HCP-Users] files under /HCP/global/templates

2016-08-31 Thread Glasser, Matthew
Why are you needing to create new versions of these files? Peace, Matt. From: > on behalf of Mahmoud > Date: Wednesday, August 31, 2016 at 6:04 PM To:

[HCP-Users] files under /HCP/global/templates

2016-08-31 Thread Mahmoud
Hello Matt, Today during the HCP course, I asked Michael Harms and Tim Coalson how one can create the files under /HCP/global/templates/ especially the files under 91282_Greyordinates and standard_mesh_atlases, and both of them referred me to you. Could you advise on how to create those files for

Re: [HCP-Users] Images appear to be distorted and cut after Preprocessing

2016-08-31 Thread Dev vasu
Dear Sir, How could i possibly measure FOV of an image, and what specific requirements pertaining to FOV for HCP pipelines ?. Thanks Vasudev On 31 August 2016 at 15:06, Dev vasu wrote: > Dear Sir, > > Can i possibly use rfRMI image in place of T2w

Re: [HCP-Users] Images appear to be distorted and cut after Preprocessing

2016-08-31 Thread Dev vasu
Dear Sir, Can i possibly use rfRMI image in place of T2w image?. Thanks Vasudev On 31 August 2016 at 15:02, Glasser, Matthew wrote: > That image has an even smaller FOV. You need whole brain coverage in your > images. You set that on the scanner. > > Peace, > > Matt. > >

Re: [HCP-Users] Images appear to be distorted and cut after Preprocessing

2016-08-31 Thread Glasser, Matthew
That image has an even smaller FOV. You need whole brain coverage in your images. You set that on the scanner. Peace, Matt. From: Dev vasu > Date: Wednesday, August 31, 2016 at 7:57 AM To: Matt Glasser

Re: [HCP-Users] Images appear to be distorted and cut after Preprocessing

2016-08-31 Thread Glasser, Matthew
That T2w image does not cover the whole FOV and is not appropriate for the HCP Pipelines. Peace, Matt. From: Dev vasu > Date: Wednesday, August 31, 2016 at 6:43 AM To: Matt Glasser