Re: [HCP-Users] group comparison

Also please read wb_command -cifti-help and -gifti-help. Peace, Matt. From: > on behalf of "Harms, Michael" > Date: Thursday, December 15, 2016 at 4:20 PM To: nailin

Re: [HCP-Users] Modality colors for MMP1.0 atlas

The wb_command -*-label-export-table commands will give you the RGB triples for each label in text format. There isn't an easy way to get them per-vertex, you'd need to -cifti-separate, load the .label.gii files into matlab, and have it take the corresponding entry from the label table matching

Re: [HCP-Users] pconn.nii plot

If you make a scene file that shows the plot, wb_command -show-scene can make a capture of it to an image file. However, you'll need to use some tricks to be able to swap out the data file if you want to capture multiple plots without manually creating more scenes. If you want to make a figure

Re: [HCP-Users] group comparison

Hi, Please keep the exchange on the HCP-Users list, so that responses can be captured as part of the thread on the list. Anderson can confirm, but I believe that if you are supplying the optional “area file” as part of the -s argument to PALM, then you don’t really need an average

Re: [HCP-Users] group comparison

Do you mean for each individual subject? They are in the $subj/T1w/fsaverage_LR32k directory (assuming you want the version on the 32k mesh). cheers, -MH -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders

Re: [HCP-Users] group comparison

Hi Tim, Do you know where can I find midthickness.surf.gii file for palm CIFTI usage? Thanks! Best, Nailin 2016-12-09 16:00 GMT-05:00 Timothy Coalson : > The -metric-reduce command outputs a metric file. You should alter the > wb_command line so that the output file has

Re: [HCP-Users] Modality colors for MMP1.0 atlas

You can access the label table with wb_command -file-information Peace, Matt. From: > on behalf of "HINDRIKS, RIKKERT" > Date: Thursday, December 15,

[HCP-Users] Modality colors for MMP1.0 atlas

Dear all, I would like to get the RGB-triples used to generate Figure 3 in (Glasser et al. Nature 2016), that is, a color-triplet for each vertex of the standard 23K cortical mesh. Would these be available (I couldn't find them at https://balsa.wustl.edu/WN56)? Thanks and kind regards, Rikkert