Re: [HCP-Users] values from ROIs

You can combine the ROIs into a single map (with a different integer for each) with -cifti-reduce using INDEXMAX. You should then also mask out the areas that aren't in any ROI by using -cifti-reduce MAX on your ROIs file, and then using -cifti-math with 'index * (mask > 0)'. Finally, you need

Re: [HCP-Users] Task performance per single fMRI run (LR - RL)

Hi Joaquin and Enrico, The values in the behavioral .csv are averages across the two task runs. The per run (RL or LR) in-scanner reaction time and accuracy measures for each task for each subject are available in a {TASK}_Stats.csv file in the run specific task directory available with the

Re: [HCP-Users] values from ROIs

Hi Serguei, Not sure this helps your question, but it looks like the rest of the thread ended up here: https://www.mail-archive.com/hcp-users@humanconnectome.org/msg04426.html CC'ing Tim Coalson so he can help you

[HCP-Users] Task performance per single fMRI run (LR - RL)

Hello, We have explored the in-scanner task performance data in the behavioral .csv file provided for HCP subjects (columns GA-KF). Particularly, we are interested in the task accuracy ("Acc") and response time ("RT") variables per each task run (as opposed to any kind of average between both

Re: [HCP-Users] Libnetcdf.so.6 error during mris_make_surfaces

The package might be called netcdf in the package manager. Peace, Matt. From: > on behalf of Lisa Kramarenko > Date: Tuesday, June 27, 2017 at 1:46

[HCP-Users] Libnetcdf.so.6 error during mris_make_surfaces

Dear experts, I am getting the following error when the FreeSurferPipeline comes to the mris_make surfaces step: mris_make_surfaces: error while loading shared libraries: libnetcdf.so.6: cannot open shared object file: No such file or directory It happens when I run it on Ubuntu 14 and 16,