Re: [HCP-Users] (no subject) -> amygdala atlas

Hi Heracles, There’s a very nice parcellated amygdala atlas based on HCP data published by Tyszka and Pauli (https://www.ncbi.nlm.nih.gov/pubmed/27354150). The atlas dataset is accessible via http://evendim.caltech.edu/amygdala-atlas/ in various spaces (MNI152 1mm and 700um and CIT168 700um)

[HCP-Users] (no subject)

Does anyone know if there any atlases of amygdala subdivisions? Heracles Panagiotides, PhD ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Resampling freesurfer-HCP

I would ask on the FreeSurfer mailing list how to convert those file types to GIFTI as we are not familiar with them. Peace, Matt. From: > on behalf of Timothy Coalson >

Re: [HCP-Users] Resampling freesurfer-HCP

I am not familiar with the .w format, but it sounds like mris_convert is not actually converting it to gifti format. The second error from the .mgh method sounds like it has the surface geometry in the file, which must be removed - workbench requires geometry files (.surf.gii) and data files

Re: [HCP-Users] Resampling freesurfer-HCP

I thought it might be useful to add that the initial .w file is thresholded and does not contain values for all cerebral cortical regions. Thank you very much, Xavier. From: hcp-users-boun...@humanconnectome.org [hcp-users-boun...@humanconnectome.org] on

[HCP-Users] Resampling freesurfer-HCP

Dear HCP experts, I have an overlay freesurfer file (format is .w) which corresponds to a task activity surface map (group result). I have one .w file for each cerebral hemisphere. I would like to visualize these maps using wb_view, and have tried to follow the instructions you published

Re: [HCP-Users] FIX error in fix_3_clean.m

Thanks for letting us know that it worked. Peace, Matt. From: Sang-Young Kim > Date: Tuesday, September 12, 2017 at 10:00 AM To: Keith Jamison > Cc: Matt Glasser

Re: [HCP-Users] FIX error in fix_3_clean.m

Hello, Keith: After making change in the script of call_matlab.sh in FIX installation folder, the FIX is working without the error. I hope someone who have the same issue with me see this post. I really appreciate your help. Best, Sang-Young > On Sep 11, 2017, at 6:51 PM, Keith Jamison