Re: [HCP-Users] about surface template and writing matrix to.dlabel cifti file

We do have a version of the 7 networks labels as the first map in this file: https://balsa.wustl.edu/file/show/Q2xn It currently does not use a medial wall mask, so extra steps may be needed for using it with HCP data. I don't know if either current matlab method of cifti file IO has much suppor

Re: [HCP-Users] Correlation matrices

The -cifti-create-dense-* commands are indeed involved in manually making cifti versions of your data, though you would also need things like -volume-to-surface-mapping, as well as FreeSurfer to generate the subject surfaces - the HCP pipelines are designed for automating these steps for HCP and si

Re: [HCP-Users] Cerebellum surface

Maybe also have a look at Joern Diedrichsen’s page: http://www.diedrichsenlab.org/imaging/propatlas.htm > On Sep 19, 2017, at 9:42 AM, Glasser, Matthew wrote: > > This is built into the CIFTI format for the future, however we do not yet > have an algorithm for making individual subject cerebe

Re: [HCP-Users] CIFTI files do not contain volume data

Dear Matt: Thanks for your reply. Now I can run PALM for testing myelin map difference between groups. Best regards, Sang-Young > On Sep 18, 2017, at 4:22 PM, Glasser, Matthew wrote: > > Myelin maps are only for the cortex so you can omit the -volume-all > data_sub.nii portion of the comm

Re: [HCP-Users] Cerebellum surface

This is built into the CIFTI format for the future, however we do not yet have an algorithm for making individual subject cerebellar surfaces. I believe a “Colin” individual surface is available somewhere and perhaps David knows the details. Peace, Matt. From: mailto:hcp-users-boun...@human

[HCP-Users] Cerebellum surface

Dear experts, I was wondering whether workbench enables projecting cerebellum group data onto an available surface, and if so, where I could find the relevant surface? Kind regards, Avital ___ HCP-Users mailing list HCP-Users@humanconnectome.org http:/

Re: [HCP-Users] Correlation matrices

I’d recommend using the MSMAll aligned, cleaned CIFTI data provided by the HCP. Peace, Matt. From: Carole Guedj mailto:carole.gu...@unige.ch>> Date: Tuesday, September 19, 2017 at 2:32 AM To: Matt Glasser mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org

Re: [HCP-Users] Correlation matrices

Hi Matt, Thank for getting back to me. I am not familiar at all with the CIFTI format. I made all my preprocessing using NIFTI volume files, so the preprocessing output is in NIFTI format. I guess that I couldn’t use the -cifti-cross-correlation command with a NIFTI format. Could I create the C