[HCP-Users] MSMALL atlas usage

Hi, I would like to use this new MSMall atlas. For that I need to open it in a toolbox or matlab, however I am not able to open it using either freesurfer, caret, FSlviwer, fieldtrip, only through the workbench. So lets say I want to load this nii file in matlab using freesurfer MRIread: /BALSA

Re: [HCP-Users] MSMALL atlas usage

-- >> Conte Center for the Neuroscience of Mental Disorders >> Washington University School of Medicine >> Department of Psychiatry, Box 8134 >> 660 South Euclid Ave. Tel: 314-747-6173 >> St. Louis, MO 63110 Email: mha...@wus

Re: [HCP-Users] 180 parcellation for freesurfer?

Hi Meanwhile, you can take a look at this method: https://figshare.com/articles/HCP-MMP1_0_projected_on_fsaverage/3498446 The fsaverage atlas can be then projected to individual space with surf2surf command. Cheers, Adonay On Thu, Aug 18, 2016 at 3:01 PM, Glasser, Matthew wrote: > We’ve been

[HCP-Users] create 2k space

HI HCP MEG dataset provides surfaces with 4k vertices, I would like to resample it to 2k. I have tried wd_command -cifti-resample, but it requires a cifti-template, but i don't have any cifti of 2k. What commands should I use to get a 2k surface for every subject? Thanks __

Re: [HCP-Users] create 2k space

Wednesday, May 24, 2017 at 9:57 PM > > To: Matt Glasser > Cc: Timothy Coalson , A Nunes , > "hcp-users@humanconnectome.org" > Subject: Re: [HCP-Users] create 2k space > > Oh interesting. Now I can't remember if I found that version and used it > as a start

[HCP-Users] MEG resting state

Hi, The MEG resting state data is split in three sessions, is it possible to append the data before computing the covariance matrix? I have some doubts because the sensor position might change between the recordings and if ICA was done separately, then the rank would change between sessions and I

Re: [HCP-Users] MEG resting state

n > to this virtual MEG sensors using Fieltrip’s function ft_megrealign and > then combine all data in this virtual sensor space. Keep in mind that this > projects the data into source space and projects it back to the virtual > sensor space. > > I hope this helps > Best > Giorg

Re: [HCP-Users] R: MEG resting state

o > > > > *Da:* hcp-users-boun...@humanconnectome.org [mailto:hcp-users-bounces@ > humanconnectome.org ] *Per conto > di *Michalareas, Georgios > *Inviato:* venerdì 17 novembre 2017 14:15 > *A:* A Nunes ; > HCP-Users@humanconnectome.org > *Oggetto:* Re: [HCP-Users] MEG

[HCP-Users] label list file from dlabel

Hi I want to create a .dlabel from a .dscalar in which I have a label value for every vertex. I want to use: wb_command -metric-label-import - the input metric file - text file containing the values and names for labels output file However, I don't have a label-list-file. I

[HCP-Users] ft_write_cifti with multiple columns

Hi HCP community, I have some parcellations done in matlab, so for every vertex I have a cluster number label. I usually save it as a pscalar with the Fieldtrip function ft_write_cifti, then I convert it into a .label file. It works fine, however, I would like to not save one pscalar at a time bu

Re: [HCP-Users] ft_write_cifti with multiple columns

at 1:48 PM, Timothy Coalson wrote: > You can set map names on data files with wb_command -set-map-names. > However, as Matt says, we would rather support the ciftiread/ciftiwrite > functions for fMRI data. > > Tim > > > On Mon, Dec 18, 2017 at 2:56 PM, A Nunes wrot

Re: [HCP-Users] ft_write_cifti with multiple columns

Hi I just found it in the FAQ: https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ Thanks! Adonay On Mon, Dec 18, 2017 at 2:26 PM, A Nunes wrote: > Hi > > Thanks for your answers, however I can not find the > scripts ciftiread/ciftiwrite/ciftiwritereset, the only m