[HCP-Users] Creating Group Average Resting State fMRI

I am trying to create a resting state fMRI average over 10 subjects to view in connectome workbench. For each HCP subject, I found the following 4 files: rfMRI_REST1_RL_Atlas_hp2000_clean.dtseries.nii rfMRI_REST1_LR_Atlas_hp2000_clean.dtseries.nii rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii rfM

Re: [HCP-Users] Creating Group Average Resting State fMRI

bjects). There will be a better way in the future. > > Peace, > > Matt. > > From: Timothy Coalson > Date: Monday, May 19, 2014 at 10:48 PM > To: Ausaf Bari > Cc: "hcp-users@humanconnectome.org" > Subject: Re: [HCP-Users] Creating Group Average Restin

Re: [HCP-Users] Creating Group Average Resting State fMRI

-cifti-merge, unless there is a simple wb_command way to do this > already (we generally do this in matlab now). > > Matt. > > From: Timothy Coalson > Date: Tuesday, May 20, 2014 at 12:19 PM > To: Stephen Smith > Cc: Ausaf Bari , "hcp-users@humanconnectome.org

Re: [HCP-Users] Creating Group Average Resting State fMRI

to add to >> wb_command -cifti-merge, unless there is a simple wb_command way to do this >> already (we generally do this in matlab now). >> >> Matt. >> >> From: Timothy Coalson >> Date: Tuesday, May 20, 2014 at 12:19 PM >> To: Stephen Smith &

Re: [HCP-Users] Creating Group Average Resting State fMRI

Is there any advantage to doing the group resting state analysis with MELODIC ( using multi-session temporal concatenation) instead of the wb commands? -Ausaf On Tue, May 20, 2014 at 1:12 PM, Ausaf Bari wrote: > Tim - minor correction in your cifti-math formula: I think you need the >

Re: [HCP-Users] Creating Group Average Resting State fMRI

d average the connectomes across > subjects). There will be a better way in the future. > > Peace, > > Matt. > > From: Timothy Coalson > Date: Monday, May 19, 2014 at 10:48 PM > To: Ausaf Bari > Cc: "hcp-users@humanconnectome.org" > Subject: Re: [

Re: [HCP-Users] Creating Group Average Resting State fMRI

an_dtseries.nii file. # #Created by Ausaf Bari, 3/20/2014 # for filepath in $(find . -iname '*clean.dtseries.nii') do f=$(basename "$filepath") dir=$(dirname "$filepath") echo "Processing $filepath" wb_command -cifti-reduce $filepath MEAN $dir/me

Re: [HCP-Users] Creating Group Average Resting State fMRI

. > > cheers, > -MH > > -- > Michael Harms, Ph.D. > --- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 &g