make the scanner software
apply the correction to fMRI data during data acquisition but I can,
in principle, apply 2D or 3D correction to fMRI data afterwards. This
only works, though, after splitting up the MOSAIC data. The software
version we are using on the scanner is VE11.
Cheers,
Kri
on-scanner correction.
>
> Note that this will not be the case for 2D (eg EPI) data because
> on-scanner can only be done 2D - so that won't match post-hoc 3D correction.
>
> Cheers.
>
>
>
>
>> On 11 Apr 2018, at 17:51, Kristian Loewe <k...@kristianloewe.com
&g
On my data, dicom header (0019, 1014) contains table position.
>
> Best,
> Joo-won
>
> On 4/11/18, 9:31 AM, "Kristian Loewe" <k...@kristianloewe.com> wrote:
>
> Hi Joo-won and Keith,
>
> I don't think that the table has been moved.
dicine
>
> Department of Psychiatry, Box 8134
>
> 660 South Euclid Ave.Tel: 314-747-6173
>
> St. Louis, MO 63110 Email: mha...@wustl.edu
>
> On 4/11/18, 8:31 AM, "hcp-users-boun...@humanconnectome.org on behalf of
&
g, some of which may be enabled by default. Make sure
> those are all DISABLED. (for dcm2niix add "-x n" and for dcm2nii you can
> add "-x N -r N"
> 2. We also usually use "fslreorient2std _new and then
> gradient_unwarp.py on _new
>
> -Keith
>
>
> On Fri
Hi,
I would like to use gradunwarp for offline gradient nonlinearity
correction of some data acquired on our local Siemens scanners. I used
dcm2niix to convert the dicom data to nifti format. After applying
gradunwarp to a T1 image in nifti format (the one that originally has
the _ND
Hi Aaron,
I'm not sure if it is possible to export the colormaps directly. In any
case, I think that one could recreate the colormaps based on the
relevant code sections (take a look at
