And please let us know if you figured it out which sequence is better.
Thank you,
Mahmoud
On Tue, Jul 11, 2017 at 4:44 PM, Glasser, Matthew <glass...@wustl.edu>
wrote:
> I am not part of such a consensus. I don’t know if there have been
> rigorous comparison of the two sequence
for a dataset other than HCP
dataset?
Thank you!
Mahmoud
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Hello Donna,
Thank you for your response.
Yes, I was hoping that Matt Glasser or others who worked with Monkeys could
help me.
Best,
Mahmoud
On Friday, January 8, 2016, Donna Dierker <do...@brainvis.wustl.edu> wrote:
> Hi Mahmoud,
>
> I see what you mean about the hcp-users arch
,
Mahmoud
On Fri, Jan 8, 2016 at 10:15 AM, Erin Reid <e...@brainvis.wustl.edu> wrote:
> Hi Mahmoud,
> If you are referring to your tilted sagittal view message from earlier
> this week, you were successful in attaching the image. It is a matter of
> waiting for someone to be a
that the FreeSurferPipeline failed I believe in last
recon-all step.
I am attaching the screen shot of the T1.mgz here. Please let me know
what you think:
Thank you for your time and efforts!
Mahmoud
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and others more
about it in near future.
Best,
Mahmoud
On Tue, Dec 29, 2015 at 1:49 PM, Timothy B. Brown <tbbr...@wustl.edu> wrote:
> Hi Mahmoud,
>
> Sorry for the delay in answering your question below. I was away for the
> holidays for a while.
>
> Have you already resolve
outer edge of the pial surface. I was wondering which parameters and where
I should tweak to get a better result.
Thank you!
Mahmoud
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of
myelins, colored mostly green and yellow, while I was expecting more red.
Thank you,
Mahmoud
On Mon, Dec 28, 2015 at 1:17 PM, Erin Reid <e...@brainvis.wustl.edu> wrote:
> Hi Mahmoud,
> The pial (blue) surface line is intended to hit the very outer edge of
> the pial surface. T
s in the medial temporal
> especially, but also the insula.
>
>
> On Dec 28, 2015, at 12:56 PM, Mahmoud <zeydab...@gmail.com> wrote:
>
> > Hello Erin,
> >
> > Thank you for your response. I was hoping there are some parameters to
> tweak so I can compare th
issue (assuming that data size is less than 255x255x255)?
*mri_convert -i -o -iis 1 -ijs 1 -iks 1*
Also right after the applywarp commands, this line follows:
fslmaths "$T1wImageFile"_1mm.nii.gz -div $Mean -mul 150 -abs
"$T1wImageFile"_1mm.nii.gz
Is this for image normaliza
/111_Sigma7/MNINonLinear/T1w_restore.nii.gz
Any idea how it happened and how to fix it ?
Thank you,
Mahmoud
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of this error:
The surface validation has detected a possible Error
If the final segmentation is not valid,
try using the option '-atlas'
Does anyone know what they mean and how to fix them ?
Thank you,
Mahmoud
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Dear Tim,
I got it. Thank you for detailed explanation.
Best,
Mahmoud
On Fri, Dec 18, 2015 at 11:29 AM, Timothy B. Brown <tbbr...@wustl.edu>
wrote:
> Hi Mahmoud,
>
> Short answer:
>
> Because of directory structure conventions and file naming conventions
> used in t
values and maybe see the effect of them
but wanted to do it with some prior knowledge.
Thank you,
Mahmoud
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of that middle part which I
just didn't copy it here.
Could you please let me know what those warnings mean ? and how can I avoid
them ?
Thank you,
Mahmoud
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