[HCP-Users] DiffusionToStructural issue with epi_reg_dof

Hello, We are trying to process our custom diffusion dataset by adapting DiffusionToStructural.sh script from HCP. However when running below command its failing at the BBR step >> ${GlobalScripts}/epi_reg_dof --dof=6 --epi=$DATADIR/b0.nii.gz >> --t1=$PROCESSDIR/T1w/T1w.nii.gz >> --t1brain

[HCP-Users] HCP processing with ciftify requirements

Hi All, Thank you for suggesting “ciftify” on non-HCP datasets. We are trying to run HCP pipeline using “ciftify" tool on our custom dataset and have few questions * For running recon-all can we use Freesurfer v6. Suggested version for HCP (Freesurfer 5.0.3_HCP) seem to have compatibilit