[HCP-Users] opposite sex dizygotic twins

Hi experts, In the final data release of 1206 subjects, out of 1113 subjects with MRI data 1053 have genetically confirmed family relations. Of those, there are 158 (79 pairs) dizygotic (DZ) twins. For all DZ pairs, twins in the pair have the SAME sex. However, Hulshoff Pol, Schnack et al. (J.

[HCP-Users] 2 thickness files

Dear Experts, What is the difference between subID.L.corrThickness.native.shape.gii and subID.L.thickness.native.shape.gii? Both are in the preprocessed directory, MNINonLinear/Native For example: 100307.L.corrThickness.native.shape.gii and 100307.L.thickness.native.shape.gii Where I can

[HCP-Users] Field Map

Dear Experts, I need your advice using Field Map (FM). I have an FM from a Philips Achieva 3T 32channel coil. I believe it is from an in-scanner image intensity equalizing algorithm (i.e., Constant Level AppeaRance, CLEAR) with series description FLAIR_Ax CLEAR. How can I use this file in the p

[HCP-Users] stat output of pipeline

Dear Human Connectome project experts, I ran PreFreeSurfer & FreeSurfer shell scripts. As input data I used the second set of Example data on which gradient distortion correction has already been performed. Both PreFreeSurferPipelineBatch.sh and FreeSurferPipelineBatch.sh finished successfully.

[HCP-Users] FreesurferPipelineBatch

Dear Human Connectome project experts, I want to run the 3 FreeSurfer shell scripts. I downloaded the second set of Example data to use as input on which gradient distortion correction has already been performed. The PreFreeSurferPipelineBatch. sh finished successfully(see the attached log fi

[HCP-Users] roi grayordinates time series

Thank you for your answer, Timothy! I use Matlab. Can you get the time series for the Left Cuneus, please? Thank you for your time and efforts. Best wishes, Peka ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectom

[HCP-Users] roi grayordinates time series

Hi Timothy Coalson, Thank you for your response to my question. Can you please give me examples, along with the specific Workbench commands? I would like to get unaveraged time series with coordinates for the left cuneus and left amygdale, for example. Thank you for your time and efforts.

[HCP-Users] roi grayordinates time series

Hi experts, How do I get the list of all grayordinates, together with their unaveraged time series, that belong to each ROI of all cortical and subcortical areas of the FreeSurfer aparc.a2009s atlas? Ideally, the grayordinates would have their relative location and/or their coordinates. Can you