[HCP-Users] Fwd: Using multiple cores while running Structural Pipelines

2017-04-27 Thread Vanessa K
atically. You can choose how many to run at a time. I believe you > don’t need to specify an openmp flag unless you want fewer than all of the > cores. > > Peace, > > Matt. > > From: Vanessa K > Date: Wednesday, April 26, 2017 at 4:39 AM > To: Matt Glasser > Cc:

Re: [HCP-Users] Using multiple cores while running Structural Pipelines

2017-04-26 Thread Vanessa K
ed. In all cases, the pipelines use > multiple threads by default if they can. > > Peace, > > Matt. > > From: on behalf of Vanessa K < > vanessakr1...@gmail.com> > Date: Tuesday, April 25, 2017 at 7:36 AM > To: "hcp-users@humanconnectome.org" >

[HCP-Users] Using multiple cores while running Structural Pipelines

2017-04-25 Thread Vanessa K
Dear users, it might be a silly question but I hope you can help. I have a computer with 8 cores and I would like to use 7 of them while running pipelines that take a lot of time (such as FreeSurfer). Is there any way to specify the core number when running the script? Or are there any tricks to s

[HCP-Users] Error during Field Map Preprocessing and Gradient Unwarping in the Functional Volume Pipeline

2017-04-06 Thread Vanessa K
Hello, I encountered a weird error while trying to run the FunVol Pipeline. After the motion correction is done I get this: START: Field Map Preprocessing and Gradient Unwarping (standard_in) 1: parse error (standard_in) 1: parse error (standard_in) 1: parse error (standard_in) 1: parse error