Re: [HCP-Users] Diffusion Preprocessing Error/Bug

2017-07-06 Thread Timothy Hendrickson
Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 <(314)%20747-6173> > St. Louis, MO 63110 Email: mha...@wustl.edu > > From: on behalf of Timothy > Hendrickson > Date: Thursday, July 6, 2017 at 3:24 PM > To: "hcp-users@humanconnectome.org" &

Re: [HCP-Users] Diffusion Preprocessing Error/Bug

2017-07-06 Thread Harms, Michael
From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Timothy Hendrickson mailto:hendr...@umn.edu>> Date: Thursday, July 6, 2017 at 3:24 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:HCP-Users@humanconnectome.org>&

[HCP-Users] Diffusion Preprocessing Error/Bug

2017-07-06 Thread Timothy Hendrickson
Hello, I am having trouble running the diffusion preprocessing. Once the processing gets to eddy_postproc.sh I get the following error: *awk: cmd. line:1: fatal: cannot open file `/home/lnpi15-raid3/cgilmore-data-lnpi15/272_CENC/49769/Diffusion/eddy/eddy_unwarped_images.eddy_rotated_bvecs*. The er

Re: [HCP-Users] Diffusion Preprocessing Error

2015-06-20 Thread Glasser, Matthew
.org> Subject: [HCP-Users] Diffusion Preprocessing Error Hello, I am working on running the diffusion preprocessing pipeline using the script from https://github.com/Washington-University/Pipelines/blob/master/Examples/Scripts/DiffusionPreprocessingBatch.sh as a reference.  When it i

[HCP-Users] Diffusion Preprocessing Error

2015-06-19 Thread levi solomyak
Hello, I am working on running the diffusion preprocessing pipeline using the script from https://github.com/Washington-University/Pipelines/blob/master/Examples/Scripts/DiffusionPreprocessingBatch.sh as a reference. When it is supposed to copy the positive raw data to the working directory I kee