Re: [HCP-Users] FNIRT for HCP diffusion data

2016-11-02 Thread Glasser, Matthew
t;> Date: Wednesday, November 2, 2016 at 1:58 PM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subj

Re: [HCP-Users] FNIRT for HCP diffusion data

2016-11-02 Thread Shadi, Kamal
t;> Date: Wednesday, November 2, 2016 at 2:30 PM To: "Shadi, Kamal" <kamal.shad...@gatech.edu<mailto:kamal.shad...@gatech.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconn

Re: [HCP-Users] FNIRT for HCP diffusion data

2016-11-02 Thread Glasser, Matthew
rg<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] FNIRT for HCP diffusion data So just to see if I understood your point, If I use surfaces in ${StudyFolder}/${Subject}/T1w/fsaverag

Re: [HCP-Users] FNIRT for HCP diffusion data

2016-11-01 Thread Glasser, Matthew
rg<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] FNIRT for HCP diffusion data My plan is indeed to run probtrackx using surface ROIs. But since HCP diffusion data is not registered to the a

Re: [HCP-Users] FNIRT for HCP diffusion data

2016-11-01 Thread Glasser, Matthew
tome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] FNIRT for HCP diffusion data Hi Matt., Yes, It is an HCP subject. Thanks, Kamal From: "Glasser, Matthew" <glass...@wustl.edu<mailto:glass...@wustl.e

Re: [HCP-Users] FNIRT for HCP diffusion data

2016-11-01 Thread Shadi, Kamal
ot;hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] FNIRT for HCP diffusion data Is this an HCP subject or another subject? Peace, Matt. From: <hcp-use

Re: [HCP-Users] FNIRT for HCP diffusion data

2016-11-01 Thread Glasser, Matthew
ember 1, 2016 at 12:18 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] FNIRT for HCP diffusion data Hi all, I am trying to run probtrackx using HCP pre

[HCP-Users] FNIRT for HCP diffusion data

2016-10-31 Thread Shadi, Kamal
Hi all, I am trying to run probtrackx using HCP preprocessed diffusion data and MMP1.0 ROIs. To my understanding the corresponding T1w image of MMP1.0 ROIs is: HCP_PhaseTwo / Q1-Q6_RelatedParcellation210 / MNINonLinear / Q1-Q6_RelatedParcellation210_AverageT1w_restore.nii.gz Is this a right