Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-15 Thread K Jeffrey Eriksen
: hcp-users@humanconnectome.org Subject: RE: [HCP-Users] MEG_anatomy_transform.txt Hi , try using the latest fieldtrip version from https://github.com/fieldtrip/fieldtrip maybe it will solve the issue you have. The T1 file should have a transformation matrix converting voxel indices to actual

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-14 Thread Michalareas, Giorgos
from Best Giorgos From: K Jeffrey Eriksen [eriks...@ohsu.edu] Sent: Wednesday, February 15, 2017 1:58 AM To: Michalareas, Giorgos Cc: hcp-users@humanconnectome.org Subject: RE: [HCP-Users] MEG_anatomy_transform.txt Hi again, Back again to what you wrote

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-14 Thread K Jeffrey Eriksen
3:03 PM To: K Jeffrey Eriksen Cc: hcp-users@humanconnectome.org Subject: RE: [HCP-Users] MEG_anatomy_transform.txt Hi Jeff, there no need to run the HCP-MEG pipeline on your anatomical file. I am not sure f you can even do this if you also dont have the MEG head positioning information. You can

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-14 Thread K Jeffrey Eriksen
] On Behalf Of K Jeffrey Eriksen Sent: Tuesday, February 14, 2017 3:42 PM To: Michalareas, Giorgos Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] MEG_anatomy_transform.txt Giorgos, I have installed the FieldTrip toolbox associated with megconnectome 3.0, that is fieldtrip-r10442. I

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-14 Thread K Jeffrey Eriksen
to do that. -Jeff From: Michalareas, Giorgos [mailto:giorgos.michalar...@esi-frankfurt.de] Sent: Tuesday, February 14, 2017 3:03 PM To: K Jeffrey Eriksen Cc: hcp-users@humanconnectome.org Subject: RE: [HCP-Users] MEG_anatomy_transform.txt Hi Jeff, there no need to run the HCP-MEG pipeline o

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-14 Thread K Jeffrey Eriksen
Eriksen Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] MEG_anatomy_transform.txt Hi Jeffey, regarding: " So only two of the transforms in the transform.vox_filename = '_MEG_anatomy_anatomical.txt' are needed by BS. I just have to figure out how to create them for my non-MEG

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-14 Thread Georgios Michalareas
minus the actual MEG portions. Another is to find out if the standard HCP pipeline produces the transforms I need. Thanks, -Jeff *From:*Michalareas, Giorgos [mailto:giorgos.michalar...@esi-frankfurt.de] *Sent:* Friday, February 10, 2017 4:50 PM *To:* K Jeffrey Eriksen *Subject:* RE: [HCP-U

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-13 Thread K Jeffrey Eriksen
e right direction? One idea I have is to try to run the HCP-MEG pipeline minus the actual MEG portions. Another is to find out if the standard HCP pipeline produces the transforms I need. Thanks, -Jeff From: Michalareas, Giorgos [mailto:giorgos.michalar...@esi-frankfurt.de] Sent: Friday, Februar

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-10 Thread K Jeffrey Eriksen
...@humanconnectome.org] On Behalf Of Georgios Michalareas Sent: Friday, February 10, 2017 3:05 PM To: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] MEG_anatomy_transform.txt Dear Jeff, if I have understood correctly you want to import a structural MRI scan for a given HCP subject into Brainstorm

Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-10 Thread Georgios Michalareas
Dear Jeff, if I have understood correctly you want to import a structural MRI scan for a given HCP subject into Brainstorm for creating the EEG source model. I guess you follow a procedure similar to http://neuroimage.usc.edu/brainstorm/Tutorials/HCP-MEG and Brainstorm cannot find the

[HCP-Users] MEG_anatomy_transform.txt

2017-02-10 Thread K Jeffrey Eriksen
Hi, I am trying to import HCP processed data into Brainstorm, a Matlab-based package for EEG/MEG source analysis, in order to build an EEG source model. I do not work with MEG. Unfortunately I am failing since I do not have the _MEG_anatomy_transform.txt file that is created during the