Re: [HCP-Users] Matlab scripts for the HCP 820-subject PTN release

2017-06-03 Thread Stephen Smith
HI - this is an implementation of the variance normalisation used by MELODIC - see Beckmann TMI 2004. The idea is to remove the 30 strongest PCA components (temporarily) and use the remaining weakest components (ie residual "noise") to compute the voxelwise scalings for the variance

[HCP-Users] Matlab scripts for the HCP 820-subject PTN release

2017-06-02 Thread Chihuang Liu
Hi HCP! As I was going through the scripts for generating HCP 820-subject PTN release, there is a step in script "subproc_DO_2_groupPCA.m" that seems quite confusing to me. The part of code is pasted as follows: *BO=ciftiopen(f{r(1)},WBC); grot=demean(double(BO.cdata)'); clear BO.cdata;*