Re: [HCP-Users] PostFreesufer script : Atlas transform and Inverse Atlas Transform

2016-03-19 Thread Timothy B. Brown
Vasudev, Please look at the comments in the PreFreeSurferPipelineBatch.sh script in the Examples/Scripts directory. In particular, look at the comments that are headed with "Readout Distortion Correction:"  If you do not have field maps to use to do readout distortion correction, then you

Re: [HCP-Users] PostFreesufer script : Atlas transform and Inverse Atlas Transform

2016-03-19 Thread Timothy B. Brown
Vasudev, > I would like to know if the  "acpc_dc2standard"  and > "standard2acpc_dc" atlas was provided by HCP, or whether they are > output generated from Freesurfer.sh script, The file acpc_dc2standard.nii.gz is generated in the AtlasRegistrationToMNI152_FLIRTandFNIRT.sh script which is

[HCP-Users] PostFreesufer script : Atlas transform and Inverse Atlas Transform

2016-03-15 Thread Dev vasu
Dear Sir, I would like to know if the "*acpc_dc2standard*" and "*standard2acpc_dc*" atlas was provided by HCP, or whether they are output generated from Freesurfer.sh script, also could you please let me know if the " *acpc_dc_restore* " files which is used as naming convention in