[HCP-Users] gradient unwarp in preFS script

2014-10-16 Thread Book, Gregory
I'm continuing to fine-tune our preFS script for our data, and I'm running into trouble with the gradient unwarping step. I've obtained the .grad file from our Skyra scanner and running the HCP with it. It runs the gradient unwarp step, but seems to fail right after. If I set the GradientDistort

Re: [HCP-Users] gradient unwarp in preFS script

2014-10-16 Thread Harms, Michael
From: , Gregory <gregory.b...@hhchealth.org> Date: Thursday, October 16, 2014 10:00 AM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] gradient unwarp in preFS script I’m continuing to fine-tune our preFS script for our data, and

Re: [HCP-Users] gradient unwarp in preFS script

2014-10-16 Thread Book, Gregory
Email: mha...@wustl.edu<mailto:mha...@wustl.edu> From: , Gregory mailto:gregory.b...@hhchealth.org>> Date: Thursday, October 16, 2014 10:00 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HC

Re: [HCP-Users] gradient unwarp in preFS script

2014-10-16 Thread Glasser, Matthew
quot; <gregory.b...@hhchealth.org>, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] gradient unwarp in preFS script Hi Greg, Are you trying to re-process the HCP "unprocessed" data through the HCP pipelines?  If so, the grad co

Re: [HCP-Users] gradient unwarp in preFS script

2014-10-16 Thread Harms, Michael
, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: RE: [HCP-Users] gradient unwarp in preFS script I’m processing our own raw data, collected on our stock Skyra. Our data was collected using the HCP sequence recommendation. -G   From: Harms, Michael [mail

Re: [HCP-Users] gradient unwarp in preFS script

2014-10-16 Thread Book, Gregory
ns on later scanners so as not to be a problem. But I imagine that may just be rumor. -G From: Stephen Smith [mailto:st...@fmrib.ox.ac.uk] Sent: Thursday, October 16, 2014 11:33 AM To: Harms, Michael Cc: Book, Gregory; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] gradient unwarp in preFS s

Re: [HCP-Users] gradient unwarp in preFS script

2014-10-16 Thread Stephen Smith
of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: mha...@wustl.edu > > From: , Gregory > Date: Thursday, October 16, 2014 10:11 AM > To: "Harms, Michael" , "hcp-users@humanconnectome.org" > > Subject: RE:

Re: [HCP-Users] gradient unwarp in preFS script

2014-10-16 Thread Stephen Smith
> Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: mha...@wustl.edu > > From: , Gregory > Date