Hi all,
I ran probtrackx for HCP subject 100206 using the MMP1.0 Glasser surface ROIs.
My seeds in each ROI are at the white matter-gray matter boundary. I ran
probtrackx in network mode as well as seed-to-ROI mode for the subject, and I
applied the method described in
http://journal.frontier
:HCP-Users@humanconnectome.org>"
mailto:HCP-Users@humanconnectome.org>>
Subject: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Hi all,
I ran probtrackx for HCP subject 100206 using the MMP1.0 Glasser surface ROIs.
My seeds in each ROI are at the white matter-gray m
[HCP-Users] probtrackx network with HCP data and MMP parcellation
Can you post your probtrackx call?
Peace,
Matt.
From:
mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of "Gopalakrishnan, Karthik"
mailto:gkart...@gatech.edu>>
Date: Thursday, August 31, 201
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Hi Matt,
Here's the probtrackx calls:
For network mode:
probtrackx2 --network -x white-masks.txt -l --onewaycondition -c 0.2 -S 2000
--steplength=0.5 -P 500
@humanconnectome.org
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
What is in the .txt?
Peace,
Matt.
From: "Gopalakrishnan, Karthik"
mailto:gkart...@gatech.edu>>
Date: Friday, September 1, 2017 at 3:04 PM
To: Matt Glasser mailto:glass...@wustl.ed
p-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
The file white-masks.txt and the file targets.txt contain newline-separated
paths to each of t
: Gopalakrishnan, Karthik; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Which white matter surface are those on? I assume the bedpostX data are what
we released?
Peace,
Matt.
From: "Gopalakrishnan, Karthik"
mailto:gkart...@gatech.
anconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Yes, I used the released bedpostX data.
The white matter surfaces used were:
100206.L.white_MSMAll.32k_fs_LR.surf.gii
100206.R.white_
@humanconnectome.org
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Are all of these files in ${StudyFolder}/${Subject}/T1w?
Matt.
From: "Gopalakrishnan, Karthik"
mailto:gkart...@gatech.edu>>
Date: Friday, September 1, 2017 at 3:19 PM
To: Matt Glas
ass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Yes, both surface files I mentioned previously are the ones t
stl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Yes, both surface files I mentioned previously are the ones that are provided
in the fo
3:27 PM
To: Matt Glasser mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Yes, both surface files
stl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
S.O.S diffusion guys, poor and highly stressed Computer Science
stl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Yes, both surface files I mentioned previously are the ones that are pro
4 PM
To: Matt Glasser mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
S.O.S diffusion guys, poor and hi
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