nt: Friday, September 1, 2017 4:30:31 PM
To: Gopalakrishnan, Karthik;
hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
I don’t immediately see an issue with your calls to probtrackx, perhaps one of
the diff
>>
Date: Friday, September 1, 2017 at 3:27 PM
To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
o: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP da
Matthew <glass...@wustl.edu<mailto:glass...@wustl.edu>>
Sent: Friday, September 1, 2017 4:21:43 PM
To: Gopalakrishnan, Karthik;
hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Are all o
at 3:27 PM
To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP
ishnan, Karthik; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Are all of these files in ${StudyFolder}/${Subject}/T1w?
Matt.
From: "Gopalakrishnan, Karthik"
<gkart...@gatech.edu<mailto:gkart...@gatech.edu>>
Dat
;,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Yes, I used the released bedpostX data.
7 4:14:03 PM
To: Gopalakrishnan, Karthik; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Which white matter surface are those on? I assume the bedpostX data are what
we released?
Peace,
Matt.
From: "Gopalakrishnan, Karth
lt;mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
The file whit
k; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
What is in the .txt?
Peace,
Matt.
From: "Gopalakrishnan, Karthik"
<gkart...@gatech.edu<mailto:gkart...@gatech.edu>>
Date: Friday, September 1, 2017 at 3:0
rg<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Hi Matt,
Here's the probtrackx calls:
For network mode:
probtrackx2 --
me.org
Subject: Re: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Can you post your probtrackx call?
Peace,
Matt.
From:
<hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of "Gopalakrishnan, Karthik"
<g
31, 2017 at 9:27 PM
To: "HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>"
<HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>>
Subject: [HCP-Users] probtrackx network with HCP data and MMP parcellation
Hi all,
I ran probtrackx for HCP s
Hi all,
I ran probtrackx for HCP subject 100206 using the MMP1.0 Glasser surface ROIs.
My seeds in each ROI are at the white matter-gray matter boundary. I ran
probtrackx in network mode as well as seed-to-ROI mode for the subject, and I
applied the method described in
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