Re: [HCP-Users] speckled FA with dtifit on b1000 shell

2014-11-11 Thread Joseph Orr
ilto:HCP-Users@humanconnectome.org>" mailto:HCP-Users@humanconnectome.org>> Subject: [HCP-Users] speckled FA with dtifit on b1000 shell Per suggestions posted a few weeks back I am running drift only on the b=1000 shell. I used fslsplit to extract the volumes from data, then merged th

Re: [HCP-Users] speckled FA with dtifit on b1000 shell

2014-11-11 Thread Stamatios Sotiropoulos
Hi Joe I suspect that the data you have extracted are not consistent. Have you added b=0 images? Do these correspond to the right entries in the bvals file? I bet your dti_S0 will not look like a b=0, which would indicate that the sequence in your data file and the corresponding bvals do not co

Re: [HCP-Users] speckled FA with dtifit on b1000 shell

2014-11-11 Thread Joseph Orr
mailto:stamatios.sotiropou...@ndcn.ox.ac.uk>> Date: Tuesday, November 11, 2014 at 11:53 AM To: Joseph Orr mailto:joseph@colorado.edu>> Cc: "HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>" mailto:HCP-Users@humanconnectome.org>> Subject: Re: [HCP-Users] speckled