I've used Hugin to make multiple exposure composites (kind of like
https://en.wikipedia.org/wiki/Multiple_exposure#/media/File:Lunar-eclipse-2004.jpg)
but where the camera was hand-held and I was capturing somebody doing some
action. The two I can think of are of someone jumping over a stream
Have you tried the enblend command line option
--primary-seam-generator=nearest-feature-transform
For me this normally solves the problem. Methinks the bug is sitting in the
graph-cut (now default) seam finder algorithm.
Cheers
HB
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