[
https://issues.apache.org/jira/browse/ARROW-8734?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17101953#comment-17101953
]
Neal Richardson edited comment on ARROW-8734 at 5/7/20, 6:34 PM:
-----------------------------------------------------------------
-You need to be on the exact same version of C++ library and R package. Are you
installing from a git checkout?- Ah yes, you said that. But if you're
installing from a checkout, don't use {{install_arrow}}.
If you want a development version on macOS, why not use our nightly binaries
and avoid the hassle of a source build? {{arrow::install_arrow(nightly=TRUE)}}
should do it, or you could set the {{repos}} arg to install.packages yourself.
was (Author: npr):
You need to be on the exact same version of C++ library and R package. Are you
installing from a git checkout?
If you want a development version on macOS, why not use our nightly binaries
and avoid the hassle of a source build? {{arrow::install_arrow(nightly=TRUE)}}
should do it, or you could set the {{repos}} arg to install.packages yourself.
> [R] Compilation error on macOS
> ------------------------------
>
> Key: ARROW-8734
> URL: https://issues.apache.org/jira/browse/ARROW-8734
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Reporter: Jonathan Keane
> Priority: Major
>
> I've tried to install / build from source (with from a git checkout and using
> the built-in `install_arrow()`) and when compiling I'm getting the following
> error reliably during the auto brew process:
> {code:bash}
> x System command 'R' failed, exit status: 1, stdout + stderr:
> E> * checking for file ‘/Users/jkeane/Dropbox/arrow/r/DESCRIPTION’ ... OK
> E> * preparing ‘arrow’:
> E> * checking DESCRIPTION meta-information ... OK
> E> * cleaning src
> E> * running ‘cleanup’
> E> * installing the package to build vignettes
> E> -----------------------------------
> E> * installing *source* package ‘arrow’ ...
> E> ** using staged installation
> E> *** Generating code with data-raw/codegen.R
> E> There were 27 warnings (use warnings() to see them)
> E> *** > 375 functions decorated with [[arrow|s3::export]]
> E> *** > generated file `src/arrowExports.cpp`
> E> *** > generated file `R/arrowExports.R`
> E> *** Downloading apache-arrow
> E> **** Using local manifest for apache-arrow
> E> Thu May 7 13:13:42 CDT 2020: Auto-brewing apache-arrow in
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow...
> E> ==> Tapping autobrew/core from https://github.com/autobrew/homebrew-core
> E> Tapped 2 commands and 4639 formulae (4,888 files, 12.7MB).
> E> lz4
> E> openssl
> E> thrift
> E> snappy
> E> ==> Downloading
> https://homebrew.bintray.com/bottles/lz4-1.8.3.mojave.bottle.tar.gz
> E> Already downloaded:
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/b4158ef68d619dbf78935df6a42a70b8339a65bc8876cbb4446355ccd40fa5de--lz4-1.8.3.mojave.bottle.tar.gz
> E> ==> Pouring lz4-1.8.3.mojave.bottle.tar.gz
> E> ==> Skipping post_install step for autobrew...
> E> 🍺
> /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/lz4/1.8.3:
> 22 files, 512.7KB
> E> ==> Downloading
> https://homebrew.bintray.com/bottles/openssl-1.0.2p.mojave.bottle.tar.gz
> E> Already downloaded:
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/fbb493745981c8b26c0fab115c76c2a70142bfde9e776c450277e9dfbbba0bb2--openssl-1.0.2p.mojave.bottle.tar.gz
> E> ==> Pouring openssl-1.0.2p.mojave.bottle.tar.gz
> E> ==> Skipping post_install step for autobrew...
> E> ==> Caveats
> E> openssl is keg-only, which means it was not symlinked into
> /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow,
> E> because Apple has deprecated use of OpenSSL in favor of its own TLS and
> crypto libraries.
> E>
> E> If you need to have openssl first in your PATH run:
> E> echo 'export
> PATH="/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/bin:$PATH"'
> >> ~/.zshrc
> E>
> E> For compilers to find openssl you may need to set:
> E> export
> LDFLAGS="-L/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/lib"
> E> export
> CPPFLAGS="-I/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/include"
> E>
> E> For pkg-config to find openssl you may need to set:
> E> export
> PKG_CONFIG_PATH="/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/lib/pkgconfig"
> E>
> E> ==> Summary
> E> 🍺
> /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/openssl/1.0.2p:
> 1,793 files, 12MB
> E> ==> Downloading
> https://homebrew.bintray.com/bottles/thrift-0.11.0.mojave.bottle.tar.gz
> E> Already downloaded:
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/7e05ea11a9f7f924dd7f8f36252ec73a24958b7f214f71e3752a355e75e589bd--thrift-0.11.0.mojave.bottle.tar.gz
> E> ==> Pouring thrift-0.11.0.mojave.bottle.tar.gz
> E> ==> Skipping post_install step for autobrew...
> E> ==> Caveats
> E> To install Ruby binding:
> E> gem install thrift
> E> ==> Summary
> E> 🍺
> /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/thrift/0.11.0:
> 102 files, 7MB
> E> ==> Downloading
> https://homebrew.bintray.com/bottles/snappy-1.1.7_1.mojave.bottle.tar.gz
> E> Already downloaded:
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/1f09938804055499d1dd951b13b26d80c56eae359aa051284bf4f51d109a9f73--snappy-1.1.7_1.mojave.bottle.tar.gz
> E> ==> Pouring snappy-1.1.7_1.mojave.bottle.tar.gz
> E> ==> Skipping post_install step for autobrew...
> E> 🍺
> /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/snappy/1.1.7_1:
> 18 files, 115.8KB
> E> ==> Downloading
> https://autobrew.github.io/bottles/apache-arrow-0.17.0.el_capitan.bottle.tar.gz
> E> Already downloaded:
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/7dcf2302ba174a5efb32eaa5b8fe0ae874f4a4671f575e126c79a524830054ae--apache-arrow-0.17.0.el_capitan.bottle.tar.gz
> E> ==> Pouring apache-arrow-0.17.0.el_capitan.bottle.tar.gz
> E> ==> Skipping post_install step for autobrew...
> E> 🍺
> /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/apache-arrow/0.17.0:
> 294 files, 49.7MB
> E> ==> Caveats
> E> ==> openssl
> E> openssl is keg-only, which means it was not symlinked into
> /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow,
> E> because Apple has deprecated use of OpenSSL in favor of its own TLS and
> crypto libraries.
> E>
> E> If you need to have openssl first in your PATH run:
> E> echo 'export
> PATH="/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/bin:$PATH"'
> >> ~/.zshrc
> E>
> E> For compilers to find openssl you may need to set:
> E> export
> LDFLAGS="-L/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/lib"
> E> export
> CPPFLAGS="-I/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/include"
> E>
> E> For pkg-config to find openssl you may need to set:
> E> export
> PKG_CONFIG_PATH="/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/lib/pkgconfig"
> E>
> E> ==> thrift
> E> To install Ruby binding:
> E> gem install thrift
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewarrow.a
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewarrow_dataset.a
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewparquet.a
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewlz4.a
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewcrypto.a
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewssl.a
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewsnappy.a
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewthrift.a
> E> created
> /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewthriftz.a
> E>
> PKG_CFLAGS=-I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include
> -DARROW_R_WITH_ARROW
> E>
> PKG_LIBS=-L/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/lib
> -L/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib
> -lbrewparquet -lbrewarrow_dataset -lbrewarrow -lbrewthrift -lbrewlz4
> -lbrewsnappy
> E> ** libs
> E> clang++ -mmacosx-version-min=10.13 -std=gnu++11
> -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
> -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include
> -DARROW_R_WITH_ARROW
> -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include'
> -I/usr/local/include -fPIC -Wall -g -O2 -c array.cpp -o array.o
> E> clang++ -mmacosx-version-min=10.13 -std=gnu++11
> -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
> -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include
> -DARROW_R_WITH_ARROW
> -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include'
> -I/usr/local/include -fPIC -Wall -g -O2 -c array_from_vector.cpp -o
> array_from_vector.o
> E> clang++ -mmacosx-version-min=10.13 -std=gnu++11
> -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
> -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include
> -DARROW_R_WITH_ARROW
> -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include'
> -I/usr/local/include -fPIC -Wall -g -O2 -c array_to_vector.cpp -o
> array_to_vector.o
> E> clang++ -mmacosx-version-min=10.13 -std=gnu++11
> -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
> -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include
> -DARROW_R_WITH_ARROW
> -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include'
> -I/usr/local/include -fPIC -Wall -g -O2 -c arraydata.cpp -o arraydata.o
> E> clang++ -mmacosx-version-min=10.13 -std=gnu++11
> -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
> -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include
> -DARROW_R_WITH_ARROW
> -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include'
> -I/usr/local/include -fPIC -Wall -g -O2 -c arrowExports.cpp -o
> arrowExports.o
> E> arrowExports.cpp:1650:21: error: no member named 'CsvFileFormat' in
> namespace 'arrow::dataset'
> E> std::shared_ptr<ds::CsvFileFormat> dataset___CsvFileFormat__Make(const
> std::shared_ptr<arrow::csv::ParseOptions>& parse_options);
> E> ~~~~^
> E> 1 error generated.
> E> make: *** [arrowExports.o] Error 1
> E> ERROR: compilation failed for package ‘arrow’
> E> * removing
> ‘/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/RtmpNwJEKk/Rinstd9644c71dcbf/arrow’
> E> -----------------------------------
> E> ERROR: package installation failed
> {code}
> I'm sure I'm missing some setup step somewhere or I'm missing a necessary
> step to install from source. I've tried this both under R 3.6(.1) and 4.0 to
> see if upgrading helped and I get the same error
--
This message was sent by Atlassian Jira
(v8.3.4#803005)
