[jira] [Updated] (CODEC-139) DigestUtils: additional utility methods

2012-04-20 Thread Sebastien Dubois (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-139?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebastien Dubois updated CODEC-139: --- Attachment: DigestUtils-patch-updated-2012-04-20.txt Updated version of the patch with unit

[jira] [Updated] (MATH-780) BSPTree class and recovery of a Euclidean 3D BRep

2012-04-20 Thread Andrew Willis (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-780?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Andrew Willis updated MATH-780: --- Description: New to the work here. Thanks for your efforts on this code. I create a BSPTree from a

[jira] [Updated] (MATH-780) BSPTree class and recovery of a Euclidean 3D BRep

2012-04-20 Thread Andrew Willis (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-780?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Andrew Willis updated MATH-780: --- Attachment: BSPMesh2.java This code produces the following error: Exception in thread "

[jira] [Updated] (CODEC-104) Add a function for the classical Unix crypt(3) hash

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-104?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated CODEC-104: -- Summary: Add a function for the classical Unix crypt(3) hash (was: Please add a function for

[jira] [Updated] (CODEC-133) Add classes for MD5/SHA1/SHA-512-based Unix crypt(3) hash variants.

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-133?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated CODEC-133: -- Summary: Add classes for MD5/SHA1/SHA-512-based Unix crypt(3) hash variants. (was: Please add

[jira] [Updated] (MATH-780) BSPTree class and recovery of a Euclidean 3D BRep

2012-04-20 Thread Andrew Willis (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-780?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Andrew Willis updated MATH-780: --- Description: New to the work here. Thanks for your efforts on this code. I create a BSPTree from a

[jira] [Updated] (VFS-210) Wrapper-Mode VFS

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-210?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-210: Fix Version/s: (was: 2.0) 2.1 > Wrapper-Mode

[jira] [Updated] (VFS-228) Ant regression with ClassNotFoundException for DefaultLocalFileProvider

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-228?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-228: Fix Version/s: (was: 2.0) 2.1 > Ant regression with ClassNotFoundExcept

[jira] [Updated] (VFS-236) SmbFileObject throws NPE when used without authentication

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-236?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-236: Fix Version/s: (was: 2.0) 2.1 > SmbFileObject throws NPE when used with

[jira] [Updated] (VFS-250) URLFileName should always honor trailing slash for collections

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-250?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-250: Fix Version/s: (was: 2.0) 2.1 > URLFileName should always honor trail

[jira] [Updated] (VFS-275) add RandomAccessContent.setLength() method

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-275?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-275: Fix Version/s: (was: 2.0) 2.1 > add RandomAccessContent.setLength() met

[jira] [Updated] (VFS-254) Let FileObject and FileContent extend Closeable

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-254?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-254: Fix Version/s: (was: 2.0) 2.1 > Let FileObject and FileContent ext

[jira] [Updated] (VFS-255) Allow file operations to return a result

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-255?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-255: Fix Version/s: (was: 2.0) 2.1 > Allow file operations to return a res

[jira] [Updated] (VFS-265) Set user dir as root dir by default for FTP provider

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-265?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-265: Fix Version/s: (was: 2.0) 2.1 > Set user dir as root dir by default

[jira] [Updated] (VFS-258) Unsafe casting to AbstractFileObject subclasses in doRename()

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-258?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-258: Fix Version/s: (was: 2.0) 2.1 > Unsafe casting to AbstractFileObj

[jira] [Updated] (VFS-252) SmbFileObject does not support setLastModifiedTime while jcifs supports it, it is critical for a backup application that checks the last modified time stamp to check which f

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-252?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-252: Fix Version/s: (was: 2.0) 2.1 > SmbFileObject does not supp

[jira] [Updated] (VFS-279) ClassCastException in LocalFileSystem when using OnCall caching

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-279?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-279: Fix Version/s: (was: 2.0) 2.1 > ClassCastException in LocalFileSystem w

[jira] [Updated] (VFS-266) AbstractFileName and AbstractFileObject serialization

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-266?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-266: Fix Version/s: (was: 2.0) 2.1 > AbstractFileName and AbstractFileObj

[jira] [Updated] (VFS-393) The ls command allways returns the cached data

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-393?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-393: Fix Version/s: (was: 2.0) 2.1 > The ls command allways returns the cac

[jira] [Updated] (VFS-348) Upgrade to commons-net 2.2

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-348?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-348: Fix Version/s: (was: 2.0) 2.1 > Upgrade to commons-net

[jira] [Updated] (VFS-313) CLONE -FTP configuration does not include option for setting socket timeout

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-313?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-313: Fix Version/s: (was: 2.0) 2.1 > CLONE -FTP configuration does not incl

[jira] [Updated] (VFS-398) FtpFileObject.getChildren() fails when a folder contains a file with a colon in the name

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-398?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-398: Fix Version/s: (was: 2.0) 2.1 > FtpFileObject.getChildren() fails whe

[jira] [Updated] (VFS-395) [POM] Declare maven-scm-* dependencies as optional.

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-395?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-395: Fix Version/s: 2.1 Summary: [POM] Declare maven-scm-* dependencies as optional. (was: VFS2

[jira] [Updated] (VFS-410) [SFTP] SftpFileObject getInputStream(long) reads the whole file into memory

2012-04-20 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-410?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-410: Summary: [SFTP] SftpFileObject getInputStream(long) reads the whole file into memory (was: If using

[jira] [Updated] (VFS-410) If using getInputStream(long position) on SftpFileObject the file is read into memory

2012-04-19 Thread Martin Stockhammer (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-410?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Martin Stockhammer updated VFS-410: --- Attachment: SftpFileObject.java.patch Ok, I removed the version check and attached the patch

[jira] [Updated] (SANSELAN-74) Tiffreader fails if rows per strip and imageheight both are absent

2012-04-19 Thread Piyush Kapoor (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-74?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Piyush Kapoor updated SANSELAN-74: -- Attachment: Tiffreader.patch > Tiffreader fails if rows per strip and imageheight b

[jira] [Updated] (SANSELAN-74) Tiffreader fails if rows per strip and imageheight both are absent

2012-04-19 Thread Piyush Kapoor (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-74?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Piyush Kapoor updated SANSELAN-74: -- Description: If rowsperstrip is not present in Tiff files , we take imageHeight value as

[jira] [Updated] (SANSELAN-73) JpegImageMetada fails if exif is null

2012-04-19 Thread Piyush Kapoor (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-73?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Piyush Kapoor updated SANSELAN-73: -- Attachment: jpegmetadata.patch > JpegImageMetada fails if exif is n

[jira] [Updated] (SANSELAN-73) JpegImageMetada fails if exif is null

2012-04-19 Thread Piyush Kapoor (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-73?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Piyush Kapoor updated SANSELAN-73: -- Priority: Minor (was: Major) > JpegImageMetada fails if exif is n

[jira] [Updated] (VFS-411) [SFTP] Update Jsch to version 0.1.47 from 0.1.46.

2012-04-19 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/VFS-411?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated VFS-411: Summary: [SFTP] Update Jsch to version 0.1.47 from 0.1.46. (was: [SFTP] Update Jsch to version

[jira] [Updated] (CHAIN-68) SNAPSHOT tomcat plugin breaks the build

2012-04-19 Thread Simone Tripodi (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CHAIN-68?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Simone Tripodi updated CHAIN-68: Attachment: tomcat_runnder.diff I contacted privately Elijah and he kindly addressed the issue

[jira] [Updated] (CSV-90) CSVFormat isEscaping/isEncapsulating are not public

2012-04-18 Thread Sebb (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CSV-90?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb updated CSV-90: Summary: CSVFormat isEscaping/isEncapsulating are not public (was: CSVFormat isEscaping/isEscaping are not public

[jira] [Updated] (DIGESTER-164) RulesBase performance optimization

2012-04-18 Thread Frank David Martinez (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/DIGESTER-164?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Frank David Martinez updated DIGESTER-164: -- Attachment: rulesbase2.patch Removed Wildcard class and use simple String

[jira] [Updated] (LANG-800) CLONE - Doc bug in DateUtils#ceiling

2012-04-17 Thread Luciano Franceschina (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/LANG-800?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Luciano Franceschina updated LANG-800: -- Fix Version/s: (was: 3.0) Description: The documentation has only been

[jira] [Updated] (DIGESTER-164) RulesBase performance optimization

2012-04-17 Thread Frank David Martinez (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/DIGESTER-164?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Frank David Martinez updated DIGESTER-164: -- Attachment: rulesbase.patch Copy wildcard patterns to its own cache, so it

[jira] [Updated] (IO-326) Add new FileUtils.sizeOf[Directory] APIs to return BigInteger

2012-04-16 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-326?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated IO-326: --- Fix Version/s: 2.4 Committed first cut as sizeOf[Directory]AsBigInteger > Add

[jira] [Updated] (IO-326) Add new FileUtils.sizeOf[Directory] APIs to return BigInteger

2012-04-16 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-326?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated IO-326: --- Summary: Add new FileUtils.sizeOf[Directory] APIs to return BigInteger (was: Add or change

[jira] [Updated] (IO-326) Add or change FileUtils.sizeOfDirectory API such that it does not overflow

2012-04-16 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-326?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated IO-326: --- Summary: Add or change FileUtils.sizeOfDirectory API such that it does not overflow (was: Add or change

[jira] [Updated] (CHAIN-66) Updated Chain documentation to include new changes to the API

2012-04-15 Thread Elijah Zupancic (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CHAIN-66?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Elijah Zupancic updated CHAIN-66: - Attachment: chain-66.diff Diff for updated cookbook. > Updated Ch

[jira] [Updated] (NET-458) MVSFTPEntryParser.parseSimpleEntry - ArrayIndexOutOfBoundsException

2012-04-13 Thread Sebb (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/NET-458?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb updated NET-458: - Description: Line 360 in MVSFTPEntryParser.parseSimpleEntry : String name = entry.split(" ")[0];

[jira] [Updated] (NET-458) MVSFTPEntryParser.parseSimpleEntry - ArrayIndexOutOfBoundsException

2012-04-13 Thread Denis Molony (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/NET-458?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Denis Molony updated NET-458: - Description: Line 360 in MVSFTPEntryParser.parseSimpleEntry : String name = entry.split("

[jira] [Updated] (POOL-212) GenericObjectPool allows maxIdle < minIdle

2012-04-12 Thread Mark Thomas (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/POOL-212?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Mark Thomas updated POOL-212: - Fix Version/s: 1.5.8 1.6.1 > GenericObjectPool allows maxIdle < m

[jira] [Updated] (POOL-212) GenericObjectPool allows maxIdle < minIdle

2012-04-12 Thread Mark Thomas (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/POOL-212?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Mark Thomas updated POOL-212: - Fix Version/s: 2.0 Fixed for 2.x by using maxIdle in place of minIdle if minIdle > maxIdle. I'

[jira] [Updated] (DBCP-356) ManagedDataSource doesn't work with an active transaction in progress on IBM JDK 6+

2012-04-12 Thread Balazs Zsoldos (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-356?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Balazs Zsoldos updated DBCP-356: Attachment: TransactionRegistry.java.patch TransactionRegistry.java.patch I

[jira] [Updated] (DBCP-380) DelegatingConnection isWrapperFor dies on older JDBC drivers

2012-04-12 Thread Balazs Zsoldos (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-380?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Balazs Zsoldos updated DBCP-380: Attachment: DelegatingConnection.java.patch With the tiny patch applied the isWrappedFor function

[jira] [Updated] (DBCP-380) DelegatingConnection isWrapperFor dies on older JDBC drivers

2012-04-12 Thread Balazs Zsoldos (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/DBCP-380?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Balazs Zsoldos updated DBCP-380: Affects Version/s: 1.4 > DelegatingConnection isWrapperFor dies on older JDBC driv

[jira] [Updated] (IO-319) FileUtils.sizeOfDirectory follows symbolic links.

2012-04-11 Thread Ravi Prakash (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-319?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Ravi Prakash updated IO-319: Attachment: commons-io-319.patch Thanks for the review and pointer Gary! I've updated the patch for wi

[jira] [Updated] (MATH-779) ListPopulation Iterator allows you to remove chromosomes from the population.

2012-04-11 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-779?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-779: -- Attachment: MATH-779.txt Proposed patch. > ListPopulation Iterator allows

[jira] [Updated] (IO-319) FileUtils.sizeOfDirectory follows symbolic links.

2012-04-11 Thread Ravi Prakash (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-319?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Ravi Prakash updated IO-319: Attachment: commons-io-319.patch Hi Gary, Could you please review this patch? I wasn't able to find a w

[jira] [Updated] (IO-318) Add Charset sister APIs to method that take a String charset name.

2012-04-10 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-318?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated IO-318: --- Description: Add Charset sister APIs to method that take a String charset name (aka encoding). For

[jira] [Updated] (FUNCTOR-4) [PATCH] Add easily accessible, user-friendly examples

2012-04-09 Thread Bruno P. Kinoshita (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/FUNCTOR-4?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Bruno P. Kinoshita updated FUNCTOR-4: - Summary: [PATCH] Add easily accessible, user-friendly examples (was: Add easily

[jira] [Updated] (FUNCTOR-15) [PATCH] Distribute tests from TestAlgorithms into several test classes under algorithm test package

2012-04-09 Thread Bruno P. Kinoshita (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/FUNCTOR-15?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Bruno P. Kinoshita updated FUNCTOR-15: -- Summary: [PATCH] Distribute tests from TestAlgorithms into several test classes under

[jira] [Updated] (FUNCTOR-15) [patch] Distribute tests from TestAlgorithms into several test classes under algorithm test package

2012-04-09 Thread Bruno P. Kinoshita (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/FUNCTOR-15?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Bruno P. Kinoshita updated FUNCTOR-15: -- Summary: [patch] Distribute tests from TestAlgorithms into several test classes under

[jira] [Updated] (FUNCTOR-15) Distribute tests from TestAlgorithms into several test classes under algorithm test package

2012-04-09 Thread Bruno P. Kinoshita (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/FUNCTOR-15?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Bruno P. Kinoshita updated FUNCTOR-15: -- Attachment: FUNCTOR-15.patch Patch with tests for algorithms. This patch also

[jira] [Updated] (SANSELAN-72) Incorrect reading TIFF file

2012-04-09 Thread VVD (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-72?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] VVD updated SANSELAN-72: Attachment: out-tif.png out-png-IM.png in.tif in.png Files from

[jira] [Updated] (COLLECTIONS-404) Adding an implementation of Eugene Myers difference algorithm

2012-04-09 Thread Luc Maisonobe (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/COLLECTIONS-404?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Luc Maisonobe updated COLLECTIONS-404: -- Attachment: commons-collections-difference-v2.patch Second version of the patch

[jira] [Updated] (COLLECTIONS-388) Inconsistent Javadoc comment and code for prototypeFactory(T) in org.apache.commons.collections.FactoryUtils

2012-04-09 Thread Thomas Neidhart (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/COLLECTIONS-388?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated COLLECTIONS-388: Fix Version/s: 4.0 > Inconsistent Javadoc comment and code

[jira] [Updated] (COLLECTIONS-404) Adding an implementation of Eugene Myers difference algorithm

2012-04-09 Thread Luc Maisonobe (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/COLLECTIONS-404?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Luc Maisonobe updated COLLECTIONS-404: -- Attachment: commons-collections-difference.patch The commons-collections

[jira] [Updated] (COLLECTIONS-404) Adding an implementation of Eugene Myers difference algorithm

2012-04-09 Thread Luc Maisonobe (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/COLLECTIONS-404?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Luc Maisonobe updated COLLECTIONS-404: -- Attachment: comparator.zip The comparator.zip file is an implementation of Eugene

[jira] [Updated] (SANSELAN-71) Software field is missing in Exif TagConstant and Changing the order of reader.getbyteorder in Tiffimage parser

2012-04-09 Thread Piyush Kapoor (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-71?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Piyush Kapoor updated SANSELAN-71: -- Description: Some fields like Software has been removed while modifying ExifTagConstants . In

[jira] [Updated] (SANSELAN-71) Software field is missing in Exif TagConstant and Changing the order of reader.getbhyteorder in Tiffimage parser

2012-04-09 Thread Piyush Kapoor (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-71?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Piyush Kapoor updated SANSELAN-71: -- Attachment: sanselan.patch > Software field is missing in Exif TagConstant and Chang

[jira] [Updated] (MATH-777) More CrossoverPolicy's are needed.

2012-04-06 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-777?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-777: -- Attachment: (was: Crossover.txt) > More CrossoverPolicy's ar

[jira] [Updated] (MATH-777) More CrossoverPolicy's are needed.

2012-04-06 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-777?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-777: -- Attachment: (was: OrderedCrossover.txt) > More CrossoverPolicy's ar

[jira] [Updated] (MATH-777) More CrossoverPolicy's are needed.

2012-04-05 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-777?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-777: -- Attachment: MATH-777.txt This patch adds Cycle Crossover, N-Point Crossover, Ordered Crossover

[jira] [Updated] (CODEC-139) DigestUtils: additional utility methods

2012-04-05 Thread Sebastien Dubois (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-139?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebastien Dubois updated CODEC-139: --- Attachment: DigestUtils-patch.txt > DigestUtils: additional utility meth

[jira] [Updated] (SANSELAN-69) Incorrect reading Physical Width/Height Inch from PNG files

2012-04-05 Thread VVD (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-69?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] VVD updated SANSELAN-69: Attachment: sanselan-png-dpi.diff Fix DPI > Incorrect reading Physical Width/Height Inch f

[jira] [Updated] (SANSELAN-68) Incorrect reading Physical Width/Height Dpi and Physical Width/Height Inch from TIFF files

2012-04-05 Thread VVD (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANSELAN-68?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] VVD updated SANSELAN-68: Attachment: sanselan-tiff-dpi.diff Fix DPI > Incorrect reading Physical Width/Height Dpi

[jira] [Updated] (LANG-686) StringUtils.replaceEachRepeatedly("aaa", new String[]{"aa"}, new String[]{"aXa"}); throw an exception

2012-04-03 Thread Thomas Neidhart (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/LANG-686?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated LANG-686: - Attachment: LANG-686.patch I have worked on this a bit and provide a patch that does the following

[jira] [Updated] (MATH-777) More CrossoverPolicy's are needed.

2012-04-03 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-777?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-777: -- Attachment: OrderedCrossover.txt After attaching the first patch I discovered an error in which

[jira] [Updated] (MATH-777) More CrossoverPolicy's are needed.

2012-04-03 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-777?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-777: -- Attachment: Crossover.txt Implementations of CycleCrossover and OrderedCrossover

[jira] [Updated] (JXPATH-156) iteratePointers on relative context returns incorrect values for multidimensional arrays

2012-04-03 Thread Lukas Krejci (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/JXPATH-156?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Lukas Krejci updated JXPATH-156: Affects Version/s: 1.3 > iteratePointers on relative context returns incorrect values

[jira] [Updated] (CODEC-138) Complete FilterInputStream interface for BaseNCodecInputStream

2012-04-02 Thread Thomas Neidhart (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-138?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated CODEC-138: -- Attachment: CODEC-138.patch > Complete FilterInputStream interface

[jira] [Updated] (CODEC-96) Base64 encode() method is no longer thread-safe, breaking clients using it as a shared BinaryEncoder

2012-04-02 Thread Thomas Neidhart (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-96?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated CODEC-96: - Attachment: (was: complete_inputstream_interface.patch) > Base64 encode() method is

[jira] [Updated] (CODEC-96) Base64 encode() method is no longer thread-safe, breaking clients using it as a shared BinaryEncoder

2012-04-02 Thread Thomas Neidhart (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-96?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated CODEC-96: - Comment: was deleted (was: Small patch to implement mark and reset in a safe manner

[jira] [Updated] (CODEC-96) Base64 encode() method is no longer thread-safe, breaking clients using it as a shared BinaryEncoder

2012-04-02 Thread Thomas Neidhart (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-96?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated CODEC-96: - Attachment: complete_inputstream_interface.patch Small patch to implement mark and reset in a safe

[jira] [Updated] (MATH-776) Need range checks for elitismRate in ElitisticListPopulation constructors.

2012-04-02 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-776?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-776: -- Attachment: MATH-776.txt Proposed patch for MATH-776. > Need range checks

[jira] [Updated] (MATH-775) In the ListPopulation constructor, the check for a negative populationLimit should occur first.

2012-04-02 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-775?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-775: -- Attachment: MATH-775.txt Proposed patch for MATH-775. > In the ListPopulat

[jira] [Updated] (MATH-767) Unbalanced usage in javadoc

2012-04-01 Thread Thomas Neidhart (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-767?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated MATH-767: - Fix Version/s: 3.1 > Unbalanced usage in java

[jira] [Updated] (MATH-773) You should be able to run evolution simulation for a certain amount of time.

2012-04-01 Thread Thomas Neidhart (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-773?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thomas Neidhart updated MATH-773: - Fix Version/s: 3.1 > You should be able to run evolution simulation for a certain amount

[jira] [Updated] (CODEC-133) Please add a function for the MD5/SHA1/SHA-512 based Unix crypt(3) hash variants

2012-04-01 Thread Christian Hammers (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-133?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Christian Hammers updated CODEC-133: Attachment: commons-codec-crypt3.diff Adds GNU libc compatible crypt() methods. Md5Crypt

[jira] [Updated] (IO-318) Add Charset sister APIs to method that take a String charset name.

2012-03-30 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-318?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated IO-318: --- Description: Add Charset sister APIs to method that take a String charset name (aka encoding). For

[jira] [Updated] (DAEMON-248) jsvc does not expose java.rt.vmArgs monitor information for Java Attach API

2012-03-28 Thread Elias Ross (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/DAEMON-248?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Elias Ross updated DAEMON-248: -- Attachment: Test.java Test program. Run a process with jsvc first. > jsvc does

[jira] [Updated] (CODEC-96) Base64 encode() method is no longer thread-safe, breaking clients using it as a shared BinaryEncoder

2012-03-28 Thread Sebb (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-96?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb updated CODEC-96: -- Attachment: CODEX-96-2.patch Supersedes CODEX-96.patch > Base64 encode() method is no longer thr

[jira] [Updated] (CODEC-136) Use Charset objects when possible, create Charsets class for required character encodings

2012-03-28 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-136?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated CODEC-136: -- Summary: Use Charset objects when possible, create Charsets class for required character

[jira] [Updated] (JXPATH-155) iteratePointers give the wrong pointers

2012-03-28 Thread Martin Busch (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/JXPATH-155?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Martin Busch updated JXPATH-155: Description: I have a xml structur like these: {code:xml

[jira] [Updated] (CSV-58) Escape handling needs rethinking

2012-03-27 Thread Sebb (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CSV-58?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb updated CSV-58: Summary: Escape handling needs rethinking (was: Eascape handling needs rethinking) > Escape handling needs rethink

[jira] [Updated] (CSV-58) Eascape handling needs rethinking

2012-03-27 Thread Sebb (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CSV-58?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb updated CSV-58: Summary: Eascape handling needs rethinking (was: Unicode escapes are lost if escape character is backslash) > Easc

[jira] [Updated] (CSV-70) Improve readability of CSVLexer

2012-03-27 Thread Sebb (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CSV-70?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb updated CSV-70: Description: There are several things that can be improved in the token lexer (this has also been discussed on ML, see http

[jira] [Updated] (CODEC-136) Use Charset objects when possible, create Charsets for required character encodings

2012-03-27 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CODEC-136?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated CODEC-136: -- Fix Version/s: 1.7 > Use Charset objects when possible, create Charsets for requi

[jira] [Updated] (CSV-42) Lots of possible changes

2012-03-26 Thread Emmanuel Bourg (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CSV-42?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Emmanuel Bourg updated CSV-42: -- Description: I made a lot of changes to pretty much all of the classes in the csv package. I thought it

[jira] [Updated] (CSV-42) Lots of possible changes

2012-03-26 Thread Emmanuel Bourg (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CSV-42?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Emmanuel Bourg updated CSV-42: -- Description: I made a lot of changes to pretty much all of the classes in the csv package. I thought it

[jira] [Updated] (CSV-84) Clarify comment handling

2012-03-26 Thread Emmanuel Bourg (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CSV-84?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Emmanuel Bourg updated CSV-84: -- Fix Version/s: 1.0 Issue Type: Improvement (was: New Feature) Summary: Clarify comment

[jira] [Updated] (MATH-772) Change genetics component API to allow for different types of CrossoverPolicys and SelectionPolicys.

2012-03-26 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-772?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-772: -- Attachment: MATH-772.r2.txt > Change genetics component API to allow for different types

[jira] [Updated] (CSV-73) HSQLDB supports two different field separators

2012-03-26 Thread Sebb (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/CSV-73?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb updated CSV-73: Description: HSQLDB supports a second field separator for VARCHAR fields according to: http://www.hsqldb.org/doc/2.0/guide

[jira] [Updated] (MATH-773) You should be able to run evolution simulation for a certain amount of time.

2012-03-26 Thread Reid Hochstedler (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/MATH-773?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Reid Hochstedler updated MATH-773: -- Attachment: MATH-773.r2.txt Revision 2, with Thomas's suggestions. > Yo

[jira] [Updated] (IO-287) Use terabyte (TB), petabyte (PB) and exabyte (EB) in FileUtils.byteCountToDisplaySize(long size)

2012-03-26 Thread Gary D. Gregory (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-287?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Gary D. Gregory updated IO-287: --- Summary: Use terabyte (TB), petabyte (PB) and exabyte (EB) in FileUtils.byteCountToDisplaySize(long size

[jira] [Updated] (IO-255) XML handler to serialize/de-serialize FileEntry instances to/from XML

2012-03-26 Thread Sebb (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/IO-255?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sebb updated IO-255: Summary: XML handler to serialize/de-serialize FileEntry instances to/from XML (was: XML handler to serialize/de-serialize

[jira] [Updated] (SANDBOX-416) Improve DFS/BFS visit detecting multiple states and related actions instead of just stop/continue

2012-03-26 Thread Simone Tripodi (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/SANDBOX-416?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Simone Tripodi updated SANDBOX-416: --- Summary: Improve DFS/BFS visit detecting multiple states and related actions instead of

[jira] [Updated] (EXEC-65) Watchdog can't destroy 'sudo' and 'sleep'

2012-03-25 Thread Rusi Filipov (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/EXEC-65?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Rusi Filipov updated EXEC-65: - Description: I want to run a command from a shell script with make sure the process will be destroyed

[jira] [Updated] (EXEC-65) Watchdog can't destroy 'sudo' and 'sleep'

2012-03-25 Thread Rusi Filipov (Updated) (JIRA)
[ https://issues.apache.org/jira/browse/EXEC-65?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Rusi Filipov updated EXEC-65: - Description: I want to run a command from a shell script with make sure the process will be destroyed

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