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http://jira.codehaus.org/browse/MECLIPSE-439?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=131625#action_131625
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Michael Johns commented on MECLIPSE-439:
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I just dug into the source a little more, and I realized the plugin is smart 
enough to not delete custom files that I put in .settings.  I saw it wiping out 
the entire directory earlier, and I figured it would just take my file with it, 
but it didn't.  So that's good.

But even with this new understanding of how it works, I actually stand by my 
original improvement request.  I still think it would be nice to have a finer 
control over just what gets cleaned.

> Support filesets for clean goal
> -------------------------------
>
>                 Key: MECLIPSE-439
>                 URL: http://jira.codehaus.org/browse/MECLIPSE-439
>             Project: Maven 2.x Eclipse Plugin
>          Issue Type: Improvement
>    Affects Versions: 2.5.1
>            Reporter: Michael Johns
>
> It would be great if filesets with includes/excludes were supported for the 
> clean goal.  We have a situation where we have to commit our .settings 
> directory due to the presence of some items that are not generated by the 
> plugin, and the clean plugin simply deletes that whole directory.  I'm 
> envisioning something like the maven-clean-plugin, which lets us control 
> exactly what we want to clean.
> I realize that the plugin can generate custom configuration via the 
> <additionalConfig> tag, which would allow us to regenerate the cleaned file, 
> but if the additional config files are large, the XML in pom.xml can get 
> unwieldy very fast.  It would be easier to just commit the file and tell the 
> plugin to not clean it.

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