Nick Pentreath created SPARK-14843:
--------------------------------------
Summary: Error while encoding: java.lang.ClassCastException with
LibSVMRelation
Key: SPARK-14843
URL: https://issues.apache.org/jira/browse/SPARK-14843
Project: Spark
Issue Type: Bug
Components: ML, MLlib
Reporter: Nick Pentreath
While trying to run some example ML linear regression code, I came across the
following. In fact this error occurs when doing {{./bin/run-example
ml.LinearRegressionWithElasticNetExample}}.
{code}
scala> import org.apache.spark.ml.regression.LinearRegression
import org.apache.spark.ml.regression.LinearRegression
scala> import org.apache.spark.mllib.linalg.Vector
import org.apache.spark.mllib.linalg.Vector
scala> import org.apache.spark.sql.Row
import org.apache.spark.sql.Row
scala> val data =
sqlContext.read.format("libsvm").load("data/mllib/sample_linear_regression_data.txt")
data: org.apache.spark.sql.DataFrame = [label: double, features: vector]
scala> val model = lr.fit(data)
{code}
Stack trace:
{code}
Driver stacktrace:
...
at org.apache.spark.rdd.RDD$$anonfun$take$1.apply(RDD.scala:1276)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:357)
at org.apache.spark.rdd.RDD.take(RDD.scala:1250)
at org.apache.spark.rdd.RDD$$anonfun$first$1.apply(RDD.scala:1290)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:357)
at org.apache.spark.rdd.RDD.first(RDD.scala:1289)
at
org.apache.spark.ml.regression.LinearRegression.train(LinearRegression.scala:165)
at
org.apache.spark.ml.regression.LinearRegression.train(LinearRegression.scala:69)
at org.apache.spark.ml.Predictor.fit(Predictor.scala:90)
... 48 elided
Caused by: java.lang.RuntimeException: Error while encoding:
java.lang.ClassCastException: java.lang.Double cannot be cast to
org.apache.spark.mllib.linalg.Vector
if (input[0, org.apache.spark.sql.Row].isNullAt) null else newInstance(class
org.apache.spark.mllib.linalg.VectorUDT).serialize
:- input[0, org.apache.spark.sql.Row].isNullAt
: :- input[0, org.apache.spark.sql.Row]
: +- 0
:- null
+- newInstance(class org.apache.spark.mllib.linalg.VectorUDT).serialize
:- newInstance(class org.apache.spark.mllib.linalg.VectorUDT)
+- input[0, org.apache.spark.sql.Row].get
:- input[0, org.apache.spark.sql.Row]
+- 0
at
org.apache.spark.sql.catalyst.encoders.ExpressionEncoder.toRow(ExpressionEncoder.scala:230)
at
org.apache.spark.ml.source.libsvm.DefaultSource$$anonfun$buildReader$1$$anonfun$8.apply(LibSVMRelation.scala:209)
at
org.apache.spark.ml.source.libsvm.DefaultSource$$anonfun$buildReader$1$$anonfun$8.apply(LibSVMRelation.scala:207)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
at
org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.next(FileScanRDD.scala:90)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown
Source)
at
org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at
org.apache.spark.sql.execution.WholeStageCodegen$$anonfun$7$$anon$1.hasNext(WholeStageCodegen.scala:362)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at
org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:125)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:79)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:47)
at org.apache.spark.scheduler.Task.run(Task.scala:85)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:254)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassCastException: java.lang.Double cannot be cast to
org.apache.spark.mllib.linalg.Vector
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(Unknown
Source)
at
org.apache.spark.sql.catalyst.encoders.ExpressionEncoder.toRow(ExpressionEncoder.scala:227)
... 17 more
{code}
The error is triggered by L163 of {{LinearRegression}}:
{code}
val numFeatures = dataset.select(col($(featuresCol))).limit(1).rdd.map {
case Row(features: Vector) => features.size
}.first()
{code}
Using the above example, the following works:
{code}
scala> data.select("label").rdd.map { case Row(d: Double) => d }.first
res49: Double = -9.490009878824548
{code}
But this triggers the exception:
{code}
scala> data.select("features").rdd.map { case Row(d: Vector) => d }.first
16/04/22 11:25:20 ERROR Executor: Exception in task 0.0 in stage 87.0 (TID 98)
java.lang.RuntimeException: Error while encoding: java.lang.ClassCastException:
java.lang.Double cannot be cast to org.apache.spark.mllib.linalg.Vector
...
{code}
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