[ https://issues.apache.org/jira/browse/SPARK-1786?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Joseph E. Gonzalez updated SPARK-1786: -------------------------------------- Description: The following code block will generate a serialization error when run in the spark-shell with Kryo enabled: {code} import org.apache.spark.storage._ import org.apache.spark.graphx._ import org.apache.spark.graphx.util._ val g = GraphGenerators.gridGraph(sc, 100, 100) val e = g.edges e.persist(StorageLevel.MEMORY_ONLY_SER) e.collect().foreach(println(_)) // <- Runs successfully the first time. // The following line will fail: e.collect().foreach(println(_)) {code} The following error is generated: {code} scala> e.collect().foreach(println(_)) 14/05/09 18:31:13 INFO SparkContext: Starting job: collect at EdgeRDD.scala:59 14/05/09 18:31:13 INFO DAGScheduler: Got job 1 (collect at EdgeRDD.scala:59) with 8 output partitions (allowLocal=false) 14/05/09 18:31:13 INFO DAGScheduler: Final stage: Stage 1(collect at EdgeRDD.scala:59) 14/05/09 18:31:13 INFO DAGScheduler: Parents of final stage: List() 14/05/09 18:31:13 INFO DAGScheduler: Missing parents: List() 14/05/09 18:31:13 INFO DAGScheduler: Submitting Stage 1 (MappedRDD[15] at map at EdgeRDD.scala:59), which has no missing parents 14/05/09 18:31:13 INFO DAGScheduler: Submitting 8 missing tasks from Stage 1 (MappedRDD[15] at map at EdgeRDD.scala:59) 14/05/09 18:31:13 INFO TaskSchedulerImpl: Adding task set 1.0 with 8 tasks 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:0 as TID 8 on executor localhost: localhost (PROCESS_LOCAL) 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:0 as 1779 bytes in 3 ms 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:1 as TID 9 on executor localhost: localhost (PROCESS_LOCAL) 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:1 as 1779 bytes in 4 ms 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:2 as TID 10 on executor localhost: localhost (PROCESS_LOCAL) 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:2 as 1779 bytes in 4 ms 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:3 as TID 11 on executor localhost: localhost (PROCESS_LOCAL) 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:3 as 1779 bytes in 4 ms 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:4 as TID 12 on executor localhost: localhost (PROCESS_LOCAL) 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:4 as 1779 bytes in 3 ms 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:5 as TID 13 on executor localhost: localhost (PROCESS_LOCAL) 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:5 as 1782 bytes in 4 ms 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:6 as TID 14 on executor localhost: localhost (PROCESS_LOCAL) 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:6 as 1783 bytes in 4 ms 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:7 as TID 15 on executor localhost: localhost (PROCESS_LOCAL) 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:7 as 1783 bytes in 4 ms 14/05/09 18:31:13 INFO Executor: Running task ID 9 14/05/09 18:31:13 INFO Executor: Running task ID 8 14/05/09 18:31:13 INFO Executor: Running task ID 11 14/05/09 18:31:13 INFO Executor: Running task ID 14 14/05/09 18:31:13 INFO Executor: Running task ID 10 14/05/09 18:31:13 INFO Executor: Running task ID 13 14/05/09 18:31:13 INFO Executor: Running task ID 15 14/05/09 18:31:13 INFO Executor: Running task ID 12 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_6 locally 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_4 locally 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_2 locally 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_7 locally 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_1 locally 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_3 locally 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_0 locally 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_5 locally 14/05/09 18:31:13 ERROR Executor: Exception in task ID 13 java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 ERROR Executor: Exception in task ID 10 java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 ERROR Executor: Exception in task ID 11 java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 ERROR Executor: Exception in task ID 12 java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 ERROR Executor: Exception in task ID 15 java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 ERROR Executor: Exception in task ID 8 java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 ERROR Executor: Exception in task ID 9 java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 ERROR Executor: Exception in task ID 14 java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 WARN TaskSetManager: Lost TID 11 (task 1.0:3) 14/05/09 18:31:13 WARN TaskSetManager: Loss was due to java.lang.NullPointerException java.lang.NullPointerException at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) at org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) at scala.collection.AbstractIterator.to(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) at org.apache.spark.scheduler.Task.run(Task.scala:51) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744) 14/05/09 18:31:13 ERROR TaskSetManager: Task 1.0:3 failed 1 times; aborting job 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to java.lang.NullPointerException [duplicate 1] 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to java.lang.NullPointerException [duplicate 2] 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to java.lang.NullPointerException [duplicate 3] 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to java.lang.NullPointerException [duplicate 4] 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 14/05/09 18:31:13 INFO DAGScheduler: Failed to run collect at EdgeRDD.scala:59 14/05/09 18:31:13 INFO TaskSchedulerImpl: Cancelling stage 1 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to java.lang.NullPointerException [duplicate 5] 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to java.lang.NullPointerException [duplicate 6] 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to java.lang.NullPointerException [duplicate 7] 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool org.apache.spark.SparkException: Job aborted due to stage failure: Task 1.0:3 failed 1 times, most recent failure: Exception failure in TID 11 on host localhost: java.lang.NullPointerException org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) scala.collection.Iterator$$anon$11.next(Iterator.scala:328) scala.collection.Iterator$$anon$11.next(Iterator.scala:328) scala.collection.Iterator$class.foreach(Iterator.scala:727) scala.collection.AbstractIterator.foreach(Iterator.scala:1157) scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) scala.collection.AbstractIterator.to(Iterator.scala:1157) scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) scala.collection.AbstractIterator.toArray(Iterator.scala:1157) org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) org.apache.spark.scheduler.Task.run(Task.scala:51) org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) java.lang.Thread.run(Thread.java:744) Driver stacktrace: at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1033) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1017) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1015) at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47) at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1015) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:633) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:633) at scala.Option.foreach(Option.scala:236) at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:633) at org.apache.spark.scheduler.DAGSchedulerEventProcessActor$$anonfun$receive$2.applyOrElse(DAGScheduler.scala:1207) at akka.actor.ActorCell.receiveMessage(ActorCell.scala:498) at akka.actor.ActorCell.invoke(ActorCell.scala:456) at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:237) at akka.dispatch.Mailbox.run(Mailbox.scala:219) at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:386) at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107 {code} We believe the error is associated with serialization of the EdgePartition. was: The following code block will generate a serialization error when run in the spark-shell with Kryo enabled: import org.apache.spark.storage._ import org.apache.spark.graphx._ import org.apache.spark.graphx.util._ val g = GraphGenerators.gridGraph(sc, 100, 100) val e = g.edges e.persist(StorageLevel.MEMORY_ONLY_SER) e.collect().foreach(println(_)) e.collect().foreach(println(_)) > Kryo Serialization Error in GraphX > ---------------------------------- > > Key: SPARK-1786 > URL: https://issues.apache.org/jira/browse/SPARK-1786 > Project: Spark > Issue Type: Bug > Components: GraphX > Affects Versions: 1.0.0 > Reporter: Joseph E. Gonzalez > > The following code block will generate a serialization error when run in the > spark-shell with Kryo enabled: > {code} > import org.apache.spark.storage._ > import org.apache.spark.graphx._ > import org.apache.spark.graphx.util._ > val g = GraphGenerators.gridGraph(sc, 100, 100) > val e = g.edges > e.persist(StorageLevel.MEMORY_ONLY_SER) > e.collect().foreach(println(_)) // <- Runs successfully the first time. > // The following line will fail: > e.collect().foreach(println(_)) > {code} > The following error is generated: > {code} > scala> e.collect().foreach(println(_)) > 14/05/09 18:31:13 INFO SparkContext: Starting job: collect at EdgeRDD.scala:59 > 14/05/09 18:31:13 INFO DAGScheduler: Got job 1 (collect at EdgeRDD.scala:59) > with 8 output partitions (allowLocal=false) > 14/05/09 18:31:13 INFO DAGScheduler: Final stage: Stage 1(collect at > EdgeRDD.scala:59) > 14/05/09 18:31:13 INFO DAGScheduler: Parents of final stage: List() > 14/05/09 18:31:13 INFO DAGScheduler: Missing parents: List() > 14/05/09 18:31:13 INFO DAGScheduler: Submitting Stage 1 (MappedRDD[15] at map > at EdgeRDD.scala:59), which has no missing parents > 14/05/09 18:31:13 INFO DAGScheduler: Submitting 8 missing tasks from Stage 1 > (MappedRDD[15] at map at EdgeRDD.scala:59) > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Adding task set 1.0 with 8 tasks > 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:0 as TID 8 on > executor localhost: localhost (PROCESS_LOCAL) > 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:0 as 1779 bytes in > 3 ms > 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:1 as TID 9 on > executor localhost: localhost (PROCESS_LOCAL) > 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:1 as 1779 bytes in > 4 ms > 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:2 as TID 10 on > executor localhost: localhost (PROCESS_LOCAL) > 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:2 as 1779 bytes in > 4 ms > 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:3 as TID 11 on > executor localhost: localhost (PROCESS_LOCAL) > 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:3 as 1779 bytes in > 4 ms > 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:4 as TID 12 on > executor localhost: localhost (PROCESS_LOCAL) > 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:4 as 1779 bytes in > 3 ms > 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:5 as TID 13 on > executor localhost: localhost (PROCESS_LOCAL) > 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:5 as 1782 bytes in > 4 ms > 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:6 as TID 14 on > executor localhost: localhost (PROCESS_LOCAL) > 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:6 as 1783 bytes in > 4 ms > 14/05/09 18:31:13 INFO TaskSetManager: Starting task 1.0:7 as TID 15 on > executor localhost: localhost (PROCESS_LOCAL) > 14/05/09 18:31:13 INFO TaskSetManager: Serialized task 1.0:7 as 1783 bytes in > 4 ms > 14/05/09 18:31:13 INFO Executor: Running task ID 9 > 14/05/09 18:31:13 INFO Executor: Running task ID 8 > 14/05/09 18:31:13 INFO Executor: Running task ID 11 > 14/05/09 18:31:13 INFO Executor: Running task ID 14 > 14/05/09 18:31:13 INFO Executor: Running task ID 10 > 14/05/09 18:31:13 INFO Executor: Running task ID 13 > 14/05/09 18:31:13 INFO Executor: Running task ID 15 > 14/05/09 18:31:13 INFO Executor: Running task ID 12 > 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_6 locally > 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_4 locally > 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_2 locally > 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_7 locally > 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_1 locally > 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_3 locally > 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_0 locally > 14/05/09 18:31:13 INFO BlockManager: Found block rdd_12_5 locally > 14/05/09 18:31:13 ERROR Executor: Exception in task ID 13 > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 ERROR Executor: Exception in task ID 10 > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 ERROR Executor: Exception in task ID 11 > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 ERROR Executor: Exception in task ID 12 > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 ERROR Executor: Exception in task ID 15 > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 ERROR Executor: Exception in task ID 8 > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 ERROR Executor: Exception in task ID 9 > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 ERROR Executor: Exception in task ID 14 > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 WARN TaskSetManager: Lost TID 11 (task 1.0:3) > 14/05/09 18:31:13 WARN TaskSetManager: Loss was due to > java.lang.NullPointerException > java.lang.NullPointerException > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > at > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > at scala.collection.Iterator$class.foreach(Iterator.scala:727) > at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > at > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > at > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > at scala.collection.AbstractIterator.to(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > at > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > at scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > at org.apache.spark.scheduler.Task.run(Task.scala:51) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > at java.lang.Thread.run(Thread.java:744) > 14/05/09 18:31:13 ERROR TaskSetManager: Task 1.0:3 failed 1 times; aborting > job > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks > have all completed, from pool > 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to > java.lang.NullPointerException [duplicate 1] > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks > have all completed, from pool > 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to > java.lang.NullPointerException [duplicate 2] > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks > have all completed, from pool > 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to > java.lang.NullPointerException [duplicate 3] > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks > have all completed, from pool > 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to > java.lang.NullPointerException [duplicate 4] > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks > have all completed, from pool > 14/05/09 18:31:13 INFO DAGScheduler: Failed to run collect at EdgeRDD.scala:59 > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Cancelling stage 1 > 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to > java.lang.NullPointerException [duplicate 5] > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks > have all completed, from pool > 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to > java.lang.NullPointerException [duplicate 6] > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks > have all completed, from pool > 14/05/09 18:31:13 INFO TaskSetManager: Loss was due to > java.lang.NullPointerException [duplicate 7] > 14/05/09 18:31:13 INFO TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks > have all completed, from pool > org.apache.spark.SparkException: Job aborted due to stage failure: Task 1.0:3 > failed 1 times, most recent failure: Exception failure in TID 11 on host > localhost: java.lang.NullPointerException > > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:269) > > org.apache.spark.graphx.impl.EdgePartition$$anon$1.next(EdgePartition.scala:262) > scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > scala.collection.Iterator$$anon$11.next(Iterator.scala:328) > scala.collection.Iterator$class.foreach(Iterator.scala:727) > scala.collection.AbstractIterator.foreach(Iterator.scala:1157) > > scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48) > > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103) > > scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47) > scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273) > scala.collection.AbstractIterator.to(Iterator.scala:1157) > > scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265) > scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157) > > scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252) > scala.collection.AbstractIterator.toArray(Iterator.scala:1157) > org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > org.apache.spark.rdd.RDD$$anonfun$15.apply(RDD.scala:706) > > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > > org.apache.spark.SparkContext$$anonfun$runJob$4.apply(SparkContext.scala:1071) > org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:111) > org.apache.spark.scheduler.Task.run(Task.scala:51) > org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:208) > > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) > > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > java.lang.Thread.run(Thread.java:744) > Driver stacktrace: > at > org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1033) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1017) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1015) > at > scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) > at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47) > at > org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1015) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:633) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:633) > at scala.Option.foreach(Option.scala:236) > at > org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:633) > at > org.apache.spark.scheduler.DAGSchedulerEventProcessActor$$anonfun$receive$2.applyOrElse(DAGScheduler.scala:1207) > at akka.actor.ActorCell.receiveMessage(ActorCell.scala:498) > at akka.actor.ActorCell.invoke(ActorCell.scala:456) > at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:237) > at akka.dispatch.Mailbox.run(Mailbox.scala:219) > at > akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:386) > at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) > at > scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) > at > scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) > at > scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107 > {code} > We believe the error is associated with serialization of the EdgePartition. -- This message was sent by Atlassian JIRA (v6.2#6252)