[Jmol-developers] CIF/mmCIF/STAR _ vs . + case sensitivity

2004-03-24 Thread Miguel
I do not understand the difference between _ (underscore) and . (dot) in CIF/STAR commands. I have not found a DDL reference that explains the difference. Some files have: _cell_length_a others have: _cell.length_a I have a similar question regarding case sensitivity. Some files have: _a

[Jmol-developers] shelx + atom named 'Q'

2004-03-24 Thread Miguel
In the shelx reader there is a test for the atom named 'Q' If this atom is found then the line is ignored. Why is that there? Miguel --- This SF.Net email is sponsored by: IBM Linux Tutorials Free Linux tutorial presented by Daniel Robbin

Re: [Jmol-developers] CIF/mmCIF

2004-03-24 Thread Miguel
>> The 'CIFReader' in CDK is only a partial reader. > > Correct. The CIF format is copyrighted (or even patented...) and you can > call a reader a CIF reader if and only if it reads the *full* spec. The > CDK reader does not do that. Understood :-) >> Egon put in comments >> saying that it is

[Jmol-developers] Re: CIF/mmCIF

2004-03-24 Thread Peter Murray-Rust
At 01:37 24/03/2004 +0100, Miguel wrote: Peter and Henry, I have been looking at the CIFReader in cdk, with an eye towards sharing it with Jmol. I started looking at it because I thought it would be easier to do than CML, Possibly and I am hoping that Egon can help me with CML. And hopefully we c

[Jmol-developers] More comments on 10pre7

2004-03-24 Thread E.L. Willighagen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi all, here are my comments/questions: - - how does menu based measurements work? how should I select atoms for a distance? - - black background is nice for some, but I prefer a white background especially, since I am color printing views... but

[Jmol-developers] [ jmol-Bugs-922059 ] command line options

2004-03-24 Thread SourceForge.net
Bugs item #922059, was opened at 2004-03-23 23:05 Message generated for change (Comment added) made by egonw You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=922059&group_id=23629 Category: None Group: None Status: Open Resolution: None Priority: 5 Submitt

Re: [Jmol-developers] CIF/mmCIF

2004-03-24 Thread E.L. Willighagen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On Wednesday 24 March 2004 01:37, Miguel wrote: > I have been looking at the CIFReader in cdk, with an eye towards sharing > it with Jmol. > I started looking at it because I thought it would be easier to do than > CML, and I am hoping that Egon can he

[Jmol-developers] [ jmol-Bugs-922059 ] command line options

2004-03-24 Thread SourceForge.net
Bugs item #922059, was opened at 2004-03-23 23:05 Message generated for change (Comment added) made by egonw You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=922059&group_id=23629 Category: None Group: None Status: Open Resolution: None Priority: 5 Submitt