[Jmol-developers] [ jmol-Bugs-963912 ] bonded operator

2005-03-23 Thread SourceForge.net
Bugs item #963912, was opened at 2004-06-01 01:57 Message generated for change (Comment added) made by nicove You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=963912&group_id=23629 Category: None Group: None Status: Open Resolution: None Priority: 5 Submit

Re: Re: [Jmol-developers] First version of substructure command

2005-03-23 Thread nvervell
>> I have identified at least the following limitations : >> - the atomic mass can be specified in the SMILES string but is not used >> for >> the pattern matching (I didn't find the notion of atomic mass in Jmol) > >Q: Is there general value in adding a table of atomic masses to Jmol? > >Q: If w

Re: [Jmol-developers] Question on XSL

2005-03-23 Thread Daniel Leidert
Am Dienstag, den 22.03.2005, 20:59 +0100 schrieb Nicolas Vervelle: > From: "Daniel Leidert" <[EMAIL PROTECTED]> > > What about using PHP and not XML/XSL for this special problem? And BTW: > > Well, I don't know PHP, and don't know either if you can use PHP on > sourceforge websites. Usage should

Re: [Jmol-developers] First version of substructure command

2005-03-23 Thread Egon Willighagen
On Tuesday 22 March 2005 03:50 pm, [EMAIL PROTECTED] wrote: > I forgot this reason for not using CDK SMILES parser : in the comment for > the SmilesParser class, there is "So far only the SSMILES subset and the > '%' tag for more than 10 rings at a time are supported". Since I wanted to > use more

Re: [Jmol-developers] Question on XSL

2005-03-23 Thread Nicolas Vervelle
From: "Daniel Leidert" <[EMAIL PROTECTED]> > What about using PHP and not XML/XSL for this special problem? And BTW: Well, I don't know PHP, and don't know either if you can use PHP on sourceforge websites. I can learn, but I was looking for a quick way of doing this ;) > IMHO it's useless to us

Re: [Jmol-developers] First version of substructure command

2005-03-23 Thread Peter Murray-Rust
At 09:09 22/03/2005, Egon Willighagen wrote: On Monday 21 March 2005 10:38 pm, Nicolas Vervelle wrote: > I have just committed under CVS the first version of the substructure() > command for the script language. I have been thinking of having a plugins for certain functionality like this... I can

Re: Re: [Jmol-developers] First version of substructure command

2005-03-23 Thread nvervell
Hi, I forgot this reason for not using CDK SMILES parser : in the comment for the SmilesParser class, there is "So far only the SSMILES subset and the '%' tag for more than 10 rings at a time are supported". Since I wanted to use more than just the SSMILES subset, I choose not to use it. Maybe t

Re: [Jmol-developers] First version of substructure command

2005-03-23 Thread Miguel
> I have just committed under CVS the first version of the substructure() > command for the script language. Tres bien! > I have identified at least the following limitations : > - the atomic mass can be specified in the SMILES string but is not used > for > the pattern matching (I didn't find th

Re: [Jmol-developers] Interning strings

2005-03-23 Thread nvervell
Hi Miguel, it seems a good idea to do this, I will try to work on the Smiles pattern matching code this evening after office to take into account this remark and the others you already gave. Message d'origine >De: "Miguel" <[EMAIL PROTECTED]> >A: jmol-developers@lists.sourceforge.net >