[Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread SourceForge.net
Bugs item #1119489, was opened at 2005-02-09 13:34 Message generated for change (Settings changed) made by molvisions You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1119489&group_id=23629 Category: Scripting Group: None >Status: Closed >Resolution: Rejec

Re: [Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread timothy driscoll
On 2005-05-03 (20:24) Bob Hanson wrote: >I think the other convention is the "x-convention" ZXZ. >Is it safe to say that "show orientation" is going to continue >to elicit curiosity because of the unfamiliarity of Euler angles? >If so, perhaps a comment would help. Maybe: > > >>show orientation >

Re: [Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread Bob Hanson
I think the other convention is the "x-convention" ZXZ. Is it safe to say that "show orientation" is going to continue to elicit curiosity because of the unfamiliarity of Euler angles? If so, perhaps a comment would help. Maybe: >>show orientation moveTo 1 -574 772 273 91.2; OR reset; rotate z -21.

Re: [Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread Miguel
> On 2005-05-03 (13:17) SourceForge.net wrote: > >>Category: Scripting >>Group: None >>Status: Open >>Resolution: None >>Priority: 5 >>Submitted By: friedar (friedar) >>Assigned to: Nobody/Anonymous (nobody) >>Summary: show orientation typo >> >>Initial Comment: >>Show orientation gives the z rota

Re: [Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread timothy driscoll
On 2005-05-03 (17:55) Bob Hanson wrote: >It's called the "y-convention of Euler Angles" > >Tim, you will appreciate this reference: >http://biomachina.org/publications_web/KOVA02.pdf > > >timothy driscoll wrote: >>so out of curiosity, can I ask why it is done this way instead of >>an xyz rotation

Re: [Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread Bob Hanson
It's called the "y-convention of Euler Angles" Tim, you will appreciate this reference: http://biomachina.org/publications_web/KOVA02.pdf timothy driscoll wrote: so out of curiosity, can I ask why it is done this way instead of an xyz rotation (or zyx)? -- Robert M. Hanson, [EMAIL PROTECTED], 507-6

Re: [Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread Bob Hanson
this is correct functionality. It's a (z,y,z) set. See archives. Don't worry. It works! SourceForge.net wrote: Bugs item #1119489, was opened at 2005-02-09 18:34 Message generated for change (Comment added) made by friedar You can respond by visiting: https://sourceforge.net/tracker/?func=detail&a

[Jmol-developers] [ jmol-Bugs-1171305 ] Problem hiding backbone

2005-05-03 Thread SourceForge.net
Bugs item #1171305, was opened at 2005-03-27 03:58 Message generated for change (Settings changed) made by molvisions You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1171305&group_id=23629 >Category: User interface Group: HEAD >Status: Closed >Resolution:

Re: [Jmol-developers] Jmol-web permissions problems

2005-05-03 Thread Nicolas Vervelle
>> I forgot a thing with this file: the pathnames inside it (the "name" part >> of >> the properties) are full pathnames so currently they match my own >> installation (E:\Java\Jmol-web\). > >Ohh ... full pathnames ... that is unfortunate. > >> So, for the moment, it is not very helpful to hav

[Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread SourceForge.net
Bugs item #1119489, was opened at 2005-02-09 18:34 Message generated for change (Comment added) made by friedar You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1119489&group_id=23629 Category: Scripting Group: None Status: Open Resolution: None Priority:

Re: [Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread timothy driscoll
On 2005-05-03 (13:17) SourceForge.net wrote: >Category: Scripting >Group: None >Status: Open >Resolution: None >Priority: 5 >Submitted By: friedar (friedar) >Assigned to: Nobody/Anonymous (nobody) >Summary: show orientation typo > >Initial Comment: >Show orientation gives the z rotation spec twice

[Jmol-developers] [ jmol-Bugs-1119489 ] show orientation typo

2005-05-03 Thread SourceForge.net
Bugs item #1119489, was opened at 2005-02-09 13:34 Message generated for change (Comment added) made by molvisions You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1119489&group_id=23629 >Category: Scripting Group: None Status: Open Resolution: None Priori

[Jmol-developers] [ jmol-Bugs-1192479 ] spacefill values greater than 100% invalid

2005-05-03 Thread SourceForge.net
Bugs item #1192479, was opened at 2005-04-29 11:19 Message generated for change (Settings changed) made by molvisions You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1192479&group_id=23629 Category: Scripting Group: None >Status: Closed Resolution: None P

[Jmol-developers] CML extensions [was Molpro reader for jmol]

2005-05-03 Thread Peter Murray-Rust
[also copied to openbabel, jmol and CDK - please be careful in replying] At 13:15 03/05/2005, Miguel wrote: > > (1) the hack that I have done may not be optimal. The idea is that the > Molpro xml is a superset of CML, so it makes sense to use the CML parser > in Jmol for those bits. Perhaps I did i

Re: [Jmol-developers] Re: Molpro reader for jmol

2005-05-03 Thread Egon Willighagen
On Tuesday 03 May 2005 02:15 pm, Miguel wrote: > > (1) the hack that I have done may not be optimal. The idea is that the > > Molpro xml is a superset of CML, What do you mean with super set? Is it using CMLComp with some extra element? Are you using namespaces to integrate the XMLs? > > so it m

[Jmol-developers] Re: Molpro reader for jmol

2005-05-03 Thread Miguel
> Hi, I have done a little hack on the Jmol adapter code that will allow > the reading of Molpro (http://www.molpro.net) output. I hope you are > interested in it. We certainly are interested in it. I had no difficulties applying the patch and opening the sample file that you provided. > Please