Miguel wrote:
Scott wrote:
...
I've been working on a Javascript that includes a loop similar to the
following:
- XMLHTTP server request for newly generated model
- append new model to string containing all previous models
- get view
- loadInline(concatenated model)
- Jmol script call to set
Hi Miguel,
I'm currently developing an AJAX web service that uses Jmol to view
an overlay of PDB conformers generated on a server.
I've been working on a Javascript that includes a loop similar to the
following:
- XMLHTTP server request for newly generated model
- append new model to strin
Scott wrote:
> I'm currently developing an AJAX web service that uses Jmol to view
> an overlay of PDB conformers generated on a server.
OK
(Not familiar with AJAX)
> I've been working on a Javascript that includes a loop similar to the
> following:
> - XMLHTTP server request for newly generated
>>Q: What is the status of the MediaWiki extension?
>>
>>
> Currently the extension is quite basic : it allows adding Jmol applets
> and buttons.
> I already include Jmol.js to reduce the complexity of the extension :
Good
> the entire source code is only 140 lines including the XML parsing
> fun
Miguel wrote:
Nico wrote:
Ok, let's start with trace then.
IMHO, here is the list of things I need to render them with PovRay :
1. Get the path for each structure :
I am currently using JmolViewer.getPolymerCountInModel() and
JmolViewer.getPolymerLeadMidPoints()
I think that we sho
Miguel wrote:
Nico,
I would like to talk with you some about the Jmol extension that you have
started for MediaWiki.
Great :) Let's talk.
I am very interested in helping extend the functionality of this in order
to make it easy to add Jmol applets to MediaWiki pages.
For the extensions
Nico wrote:
> Ok, let's start with trace then.
> IMHO, here is the list of things I need to render them with PovRay :
>
> 1. Get the path for each structure :
> I am currently using JmolViewer.getPolymerCountInModel() and
> JmolViewer.getPolymerLeadMidPoints()
I think that we should define this in
Nico,
I would like to talk with you some about the Jmol extension that you have
started for MediaWiki.
I am very interested in helping extend the functionality of this in order
to make it easy to add Jmol applets to MediaWiki pages.
For the extensions that I made for the MoinMoin Wiki I modeled
> On Monday 22 August 2005 04:22 pm, Egon Willighagen wrote:
>
> And how would I tell Jmol to draw more than one unit cell?
>
> I think I will need to add the lattice dimensions as fields
> somewhere... where
> could I best do that?
With Egon's help, I tried out Jmol v9's handling of cif and d
On Monday 22 August 2005 04:22 pm, Egon Willighagen wrote:
> On Monday 22 August 2005 03:52 pm, Miguel wrote:
> > > Ok, what approach shall we take?
> > >
> > > 2. have all new atoms as seperate internal objects
> > > - easier to implement symmetry operations that could lead to
> > > overlapping
On Monday 22 August 2005 03:52 pm, Miguel wrote:
> > Ok, what approach shall we take?
> >
> > 2. have all new atoms as seperate internal objects
> > - easier to implement symmetry operations that could lead to
> > overlapping atoms
> > - memory is no problem for upto 10k atoms, so why worry
>
>
> On Monday 22 August 2005 01:01 pm, Miguel wrote:
>> However, I think that perhaps we should do the crystal growth stuff
>> first.
>
> Ack.
While this is something I am very interested in, I do not think I will be
able to devote time to it for at least several months.
> Ok, what approach shall
On Monday 22 August 2005 01:01 pm, Miguel wrote:
> However, I think that perhaps we should do the crystal growth stuff first.
Ack.
Ok, what approach shall we take?
1. have data only for the 'central' unit cell, and draw atoms more than once
Advantages:
- more memory efficient
- easier t
>
> Sorry if I asked this before...
>
> I was thinking about lattice planes for crystals... now that planes work
> like
> a charm... Is this already implemented?
No.
For now one has to use pmesh.
> lattice planes are planes in unit cell space. Planes are often identified
> by
> there miller ind
Sorry if I asked this before...
I was thinking about lattice planes for crystals... now that planes work like
a charm... Is this already implemented?
lattice planes are planes in unit cell space. Planes are often identified by
there miller index. E.g. (2 1 1) is the plane the goes through a/2
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