Re: [Jmol-developers] font echo

2006-09-21 Thread Bob Hanson
rspinney wrote: >>I agree a default size (font face and color, too?) would be useful. >>But the same goes for labels, for example. The way Jmol deals with >>these is to need a spec every time. >> >> > > in the works. Two options: 1) the default label is whateve was used last (might have s

Re: [Jmol-developers] font echo

2006-09-21 Thread rspinney
-- Message: 2 Date: Thu, 21 Sep 2006 09:50:57 +0200 From: "Angel Herraez" <[EMAIL PROTECTED]> Subject: Re: [Jmol-developers] [ jmol-Feature Requests-1562417 ] font / echocommands To: jmol-developers@lists.sourceforge.net Message-ID: <[EMAIL PROTECTED]> Con

Re: [Jmol-developers] [Jmol-commits] SF.net SVN: jmol: [5622] trunk/Jmol/src/org/jmol/viewer

2006-09-21 Thread Nicolas Vervelle
Bob Hanson wrote: > Nico: While this could be generallizable, right now we only have a way > of designating the isotopes "D" and "T" -- no other isotopes have their > own elemental symbols. If you know of file formats that designate > isotopes in some reasonable way, say _13C, perhaps, we cou

Re: [Jmol-developers] [ jmol-Feature Requests-1562417 ] font / echocommands

2006-09-21 Thread Bob Hanson
I believe the recent changes do all this. The code is designed to apply whatever changes one wants to whatever labels are selected. -- ah, but you mean DEFAULT values. Right.ok Bob Angel Herraez wrote: >Rick: > > > >>When using the new echo command it would be nice to be >>able to

Re: [Jmol-developers] deuterium and tritium colors

2006-09-21 Thread Bob Hanson
I'm just waiting for other opinions. I figure since Eric Martz brought it up, and the DRuMS people have been active, perhaps they had some of their own ideas (not to say your opinion isn't valued, Angel). By the way, now you can selectively color from a palette: color carbon rasmol color oxygen

[Jmol-developers] deuterium and tritium colors

2006-09-21 Thread Angel Herraez
Sorry to bring this out again, but it seems to have passed unnoticed and I think now is the time to decide it. The new ability to identify deuterium and tritium has assigned them the same color as helium and lithium, respectively. I think this may be misleading and it's better to use unique col

[Jmol-developers] [ jmol-Feature Requests-1562783 ] support for element symbols

2006-09-21 Thread SourceForge.net
Feature Requests item #1562783, was opened at 2006-09-21 05:42 Message generated for change (Comment added) made by hansonr You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1562783&group_id=23629 Please note that this message will contain a full copy of th

[Jmol-developers] [ jmol-Feature Requests-1562923 ] Carbohydrate in pop-up menu

2006-09-21 Thread SourceForge.net
Feature Requests item #1562923, was opened at 2006-09-21 10:05 Message generated for change (Comment added) made by hansonr You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1562923&group_id=23629 Please note that this message will contain a full copy of th

[Jmol-developers] [ jmol-Feature Requests-1562923 ] Carbohydrate in pop-up menu

2006-09-21 Thread SourceForge.net
Feature Requests item #1562923, was opened at 2006-09-21 17:05 Message generated for change (Tracker Item Submitted) made by Item Submitter You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1562923&group_id=23629 Please note that this message will contain a

[Jmol-developers] question -- double group names

2006-09-21 Thread Bob Hanson
Eric, Frieda, Tim, others: What do you want Jmol 11 to do with chains that have two groups with the same group number? Example (noted by Eric): 1jsa.cif loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq

Re: [Jmol-developers] Jmol-developers Digest, Vol 4, Issue 35

2006-09-21 Thread Bob Hanson
rspinney wrote: >-- > > > >>Comment By: Bob Hanson (hansonr) >> >> >Date: 2006-09-20 21:29 > >Message: >Logged In: YES >user_id=1082841 > >use > >set echo all > >then start using font/echo/color/background commands to >appl

Re: [Jmol-developers] [ jmol-Feature Requests-1562782 ] console GUI

2006-09-21 Thread Bob Hanson
I see. Right. This is a single-line editor -- [ENTER] does the execute. I've never thought of pressing "RUN" ! Angel Herraez wrote: >El 21 Sep 2006 a las 8:13, Bob Hanson escribió: > > > >>by the way, what does "Run/Halt" mean? >> >> > >I thought "Run" was the same as "Execute". > >"Halt"

Re: [Jmol-developers] Jmol-developers Digest, Vol 4, Issue 35

2006-09-21 Thread rspinney
-- >Comment By: Bob Hanson (hansonr) Date: 2006-09-20 21:29 Message: Logged In: YES user_id=1082841 use set echo all then start using font/echo/color/background commands to apply to all current echo texts. set echo none the

Re: [Jmol-developers] [ jmol-Feature Requests-1562782 ] console GUI

2006-09-21 Thread Angel Herraez
El 21 Sep 2006 a las 8:13, Bob Hanson escribió: > by the way, what does "Run/Halt" mean? I thought "Run" was the same as "Execute". "Halt" I would expect to interrupt a running script, but never tried it. I agree that having two consoles (App and Applet) that do the same with different inte

Re: [Jmol-developers] [ jmol-Feature Requests-1562782 ] console GUI

2006-09-21 Thread Bob Hanson
by the way, what does "Run/Halt" mean? SourceForge.net wrote: >Feature Requests item #1562782, was opened at 2006-09-21 12:39 >Message generated for change (Tracker Item Submitted) made by Item Submitter >You can respond by visiting: >https://sourceforge.net/tracker/?func=detail&atid=379136&aid=

[Jmol-developers] [ jmol-Feature Requests-1562783 ] support for element symbols

2006-09-21 Thread SourceForge.net
Feature Requests item #1562783, was opened at 2006-09-21 12:42 Message generated for change (Tracker Item Submitted) made by Item Submitter You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1562783&group_id=23629 Please note that this message will contain a

[Jmol-developers] [ jmol-Feature Requests-1562782 ] console GUI

2006-09-21 Thread SourceForge.net
Feature Requests item #1562782, was opened at 2006-09-21 12:39 Message generated for change (Tracker Item Submitted) made by Item Submitter You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1562782&group_id=23629 Please note that this message will contain a

Re: [Jmol-developers] [ jmol-Feature Requests-1562417 ] font / echocommands

2006-09-21 Thread Angel Herraez
Rick: > When using the new echo command it would be nice to be > able to set a default font size / style using the font > command, i.e. "font echo 12 serif;" used before any > echo commands would display them with a serif 12 font. > (Or maybe "font default echo 12 serif;" so all echos > default to

[Jmol-developers] support for element symbols

2006-09-21 Thread Angel Herraez
Bob wrote: > Aside -- anyone: Can you think of any good reason NOT to add support for > element symbols? > select _C or _N > same as > select carbon or nitrogen VERY useful. It will avoid mistyping errors for non-English speaking users (e.g. oxigen for oxygen). -