Re: [Cdk-devel] Re: [Jmol-developers] 3D structure generator

2003-06-14 Thread Carl Resnikoff
At 02:17 AM 6/14/2003 Saturday, Peter Murray-Rust wrote: Here's a shopping list: - a rule-based architecture. We don't have one. I don't think we want to bundle Prolog into the system. Are there alternatives? People I know who are rules experts think highly of JESS, which is a rules engine writte

[Jmol-developers] 3D structure generator

2003-06-13 Thread Carl Resnikoff
Hi Egon. That sounds like a great project. It may be too big to take on entirely on my own, but I would be happy to contribute to it. I assume for a first pass that one could either use the standard geometries for single, double, triple bonds between atoms of various elements, plus some kind of

Re: [Jmol-developers] A small wishlist

2003-06-10 Thread Carl Resnikoff
Miguel, you are correct, it definitely is the Chime plugin, I keep getting an error on Explorer when I access that page: "The ChemScape Chime plug-in 'chimepeek' is busy" . Now if I could just see whatever graphic it was trying to display I would be happy. Carl At 11:08 AM 6/10/2003 Tue

[Jmol-developers] Re: Being a developer

2003-06-05 Thread Carl Resnikoff
At 12:25 PM 5/31/2003 Saturday, E.L. Willighagen (Egon) wrote: On Saturday 31 May 2003 20:49, Carl Resnikoff wrote: > Hi. I would like to try to contribute to Jmol and CDK. I am an > experienced Java developer (since JDK 1.0a2 in 1995), > MS in EE/Computer Sci (UC Berkeley), and a cof

[Jmol-developers] Menu hook for multiple Jmol windows

2003-06-05 Thread Carl Resnikoff
I've got multiple Jmol windows basically working, but not wired into the menu system yet. Question for everybody: How do you want the user to specify they want a new window? The obvious thing would be having a menu item called "New" under the File menu, but I'm completely open to other ideas. Car

Re: [Jmol-developers] Corrupt JAR file

2003-06-05 Thread Carl Resnikoff
That did it. Thanks! Carl At 03:44 PM 6/4/2003 Wednesday, Miguel wrote: Carl, Try deleting your jars subdirectory then doing a cvs up -d in the Jmol directory This will force a fresh copy of the entire directory to come down. I tried it and it seemed to work on both my Linux box & my W

Re: [Jmol-developers] Corrupt JAR file

2003-06-05 Thread Carl Resnikoff
Hi Miguel. I just did an update, and the date on the file got updated, but it is still showing up in the jar/CVS/Entries file as being type "-ko", not "-kb", and the build is still failing in the same place. Carl At 02:11 PM 6/4/2003 Wednesday, Miguel wrote: Done > It appears that Jmol\j

[Jmol-developers] Corrupt JAR file

2003-06-05 Thread Carl Resnikoff
It appears that Jmol\jars\gnujaxp-saxonly.jar was created in CVS with the wrong flags, "-ko" instead of "-kb", so Ant is choking when it tries to extract it. Could somebody delete and recreate it with the correct flags. Thanks, Carl [unjar] Expanding: F:\chemistry\Jmol\jars\gnujaxp-saxonly.jar i

Re: [Jmol-developers] Corrupt docbook file?

2003-06-05 Thread Carl Resnikoff
Yup, that fixed the problem, I am now able to get past the doc part of the build. Carl At 10:19 AM 6/4/2003 Wednesday, Miguel wrote: > They suggest that you may want to use > -kb to prevent keyword expansion. So, it doesn't seem like this should > address the problem. Carl, I just found a

Re: [Jmol-developers] Corrupt docbook file?

2003-06-05 Thread Carl Resnikoff
Miguel, I can open the version from http://sourceforge.net/projects/docbook with no problems, and it is a different size than the one from CVS. Carl At 02:27 AM 6/4/2003 Wednesday, Miguel wrote: Carl, Hmmm ... I don't think unix boxes are having troubles ... although I haven't tried it ye

[Jmol-developers] Corrupt docbook file?

2003-06-04 Thread Carl Resnikoff
My builds are failing on check.docbook: check.docbook: [untar] Expanding: F:\chemistry\Jmol\doc\docbook-xsl-1.61.2.tar.gz into F:\chemistry\J mol\build BUILD FAILED file:F:/chemistry/Jmol/build.xml:537: Error while expanding F:\chemistry\Jmol\doc\docbook- xsl-1.61.2.tar.gz I am also not ab

Re: [Jmol-developers] Re: Being a developer

2003-06-02 Thread Carl Resnikoff
At 12:50 AM 6/1/2003 Sunday, Miguel wrote: Carl, Glad to have you on board! Thanks! > On Saturday 31 May 2003 20:49, Carl Resnikoff wrote: >> Hi. I would like to try to contribute to Jmol and CDK. I am an >> experienced Java developer (since JDK 1.0a2 in 1995), >> MS i