6.cab";,
I am not criticizing jmol.js which is clearly a HUGE benefit for most
(all?) authors of Jmol websites. I apologize for being a troglodyte
(defined at dictionary.com as "A curmudgeon attached to an obsolescent
computing environment").
-Eric
/* - - - - - - - - - -
too, and that factors into my assessment of priority.
-Eric Martz
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At 3/25/04, you wrote:
In RasMol/Chime the color of the labels and measurements is the same as
the atom color.
I don't particularly like that ... so I have changed it for Jmol (the
RasMol coloring scheme is still available through 'set color rasmol')
Thanks for set color rasmol!
Q: What do other
ocument on browser compatibility with Chime, and
created a new document with step by step instructions for downloading and
installing Chime.
Finally, I created a new document listing the history of Chime versions and
key changes in each version, also linked at the URL above.
-
t; in Jmol
Date: Sat, 13 Mar 2004 14:27:21 -0600
Here are a couple of examples of structures with zero occupancy atoms:
1CBW (see residues B-79, B-84, B-87, B-129, B-145, C-154, D-1, D-26, and
others)
-Eric Martz
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t monitor color *not* be
Why not? I like that, and changing it may alter the results of old scripts.
And, I would apply the same reasoning to 'label'. One should be able to
set label colors on individual labels.
No problem w
nserved Patches in Proteins: http://consurf.tau.ac.il
Atlas of Macromolecules: http://molvis.sdsc.edu/atlas/atlas.htm
PDB Lite Macromolecule Finder: http://pdblite.org
Molecular Visualization EMail List:
http://www.umass.edu/microbio/rasmol/raslist.htm
Eric Martz, Professor Emeritus, Dept M
.edu/molvis/workshop
World Index of Molecular Visualization Resources: http://molvisindex.org
ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il
Atlas of Macromolecules: http://molvis.sdsc.edu/atlas/atlas.htm
PDB Lite Macromolecule Finder: http://pdblite.org
Molecular Visualization EM
sindex.org
ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il
Atlas of Macromolecules: http://molvis.sdsc.edu/atlas/atlas.htm
PDB Lite Macromolecule Finder: http://pdblite.org
Molecular Visualization EMail List:
http://www.umass.edu/microbio/rasmol/raslist.htm
Eric Martz, Prof
At 1/14/04, timothy driscoll wrote:
I don't recall if any other well-known mol vis programs color by charge; I'll
check it out. as a developer, I usually use lightened shades of blue
(positive) and red (negative) to indicate charge.
My impression is that this is perhaps the most common color sch
K for the less
common elements to diverge from the historic scheme.
-Eric Martz
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At 1/12/04, Miguel Howard wrote:
Eric and/or Tim and/or Frieda ... If you can, please confirm that this is
the desired behavior.
Looks good to me at first glance. If it differs from Chime's behavior, it
might cause some compatibility issues, but in some cases we need to do
things better than Ch
At 1/12/04, Miguel Howard wrote:
> There is a related (and for PE very serious for rare PDB files) bug in
> Chime regarding alignment of group (residue) names. It would be best if
> Jmol can handle residue names in any alignment of the three-character
> field, e.g. A__, _A_, __A, PC_, _PC.
The curr
p://molvisindex.org
ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il
Atlas of Macromolecules: http://molvis.sdsc.edu/atlas/atlas.htm
PDB Lite Macromolecule Finder: http://pdblite.org
Molecular Visualization EMail List:
http://www.umass.edu/microbio/rasmol/raslist.htm
E
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