From: Miguel <[EMAIL PROTECTED]>
> Phil wrote:
>
> > Another useful bit in the JavaScript library would be a piece of
> code that
> > would allow us to call Jmol as a percentage of the open window.
> Specifying> the size of the Jmol app in pixels is worrisome since
> developers never
> > know a
> I think a useful addition to the Jmol.js JavaScript library would
> be a
> function to verify browser compatibility.
Another useful bit in the JavaScript library would be a piece of code that would allow
us to call Jmol as a percentage of the open window. Specifying the size of the Jmol
app
From: Miguel Howard <[EMAIL PROTECTED]>
> Phillip,
>
> > Although I like the idea of using colors suggestive of the 'native
> > state', grey for Si is not particularly enticing.
> ...
>
> > until ground up into
> > sand where it generally has a yellowish color.
>
> When I think silicon I think o
- Original Message -
From: Geoff Hutchison <[EMAIL PROTECTED]>
Date: Tuesday, January 20, 2004 4:29 pm
>
> So I'll list a few problems I see with the rasmol colors:
> - silicon is an orange-ish color (#DAA520), but IMHO it should be
> a
> grey-ish to match a Si wafer
Although I like the
- Original Message -
From: Miguel Howard <[EMAIL PROTECTED]>
Date: Saturday, January 17, 2004 12:43 pm
Subject: [Jmol-developers] resolving color differences
> There differences in the RasMol and OpenBabel coloring schemes.
>
> Not sure what the mechanism should be to try to resolve the
- Original Message -
From: timothy driscoll <[EMAIL PROTECTED]>
Date: Friday, January 16, 2004 9:33 am
> ...
> We
> could> change the appearance of the colors in the element frames
> throughout> the site by simply rewriting that single css file w/
> new preferences
> > for a different c
[various parties in the discussions at various times said:]
> > using different codes for element colors isn't going to
> > 'break' existing scripts.
>
> Here is what I was thinking ... someone who used the default
> colors but
> then had a 'color key' in HTML.
For the benefit of this discussio
- Original Message -
From: Eric Martz <[EMAIL PROTECTED]>
Date: Thursday, January 15, 2004 1:23 pm
Subject: Re: [Jmol-developers] Re: inorganic color schemes
> At 1/12/04, timothy driscoll wrote:
> >I would prefer to see Jmol implement a superset of the
> Chime/RasMol cpk
> >scheme. I'd
- Original Message -
From: Miguel Howard <[EMAIL PROTECTED]>
Date: Sunday, January 11, 2004 5:09 pm
Subject: Re: ionic radii in Jmol
> > Nor I. I suggested in a previous e-mail that the Jmol
> Display/Spacefill/> menu include several options: AnisoTemp,
> Covalent, vdWaals, and Ionic
>
From: Eric Martz <[EMAIL PROTECTED]>
Date: Sunday, January 11, 2004 2:10 pm
Subject: Re: ionic radii in Jmol
> At 1/11/04, Miguel Howard wrote:
> >I have added the table of ionic radii to Jmol.
> > - the table is what Phillip sent me:
> >Handbook of Chemistry and Physics. 48th Ed, 1967-8, p.
Sorry, Miguel, if that looked anything but messy.
I've broken it down and annotated the script a bit so you can see what makes it do
what it does. Some are rasmol-derived commands; the 'move' is chime script, if I
recall, which handles rotations, moves, and slabs.
--Phil
SCRIPT="
reset;
cent
Just for fun, have a look at our display of Kcsa potassium transport channel at:
http://www.soils.wisc.edu/virtual_museum/kcsa/index.html
and try the button labelled "Animate KcsA!!"
You will see rotation, use of the move script to move the slab plane, incremental
changes in atom size, plus a
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