Hi Bob

Here is an example which I use for testing.
It still needs a lot of testing and there are still errors.
http://www.bioinformatics.org/strap/strap.php?script=http%3A%2F%2Fwww.bioinformatics.org%2Fstrap%2FPDF%2F2003%2FPMID12595256%2F2.txt&v3d=jmol

In this example the user may manually press the tool button "Features".
Feature underlinings on the sequences can then be moved via drag-and-drop with 
the mouse into the 3D visualization.

By double clicking a feature (underlining in the sequence), features can be 
edited.
You can add 3D-commands like "spheres on"
You may also narrow it to certain atom types like "*.CA"

By replacing "jmol" in the url by "astex" or "pymol", you see your competitors.

Cheers Christoph






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