Re: [Jmol-developers] MolFile errors

2013-02-06 Thread N David Brown
p.s. Thank you for the information anyway! On 6 February 2013 09:56, N David Brown wrote: > As I said in my last email in the thread, I wasn't adhering to the column > standard. > > David > > > On 5 February 2013 22:23, Robert Hanson wrote: > >> David, >> >> Where's your third coordinate? Are

Re: [Jmol-developers] MolFile errors

2013-02-06 Thread N David Brown
As I said in my last email in the thread, I wasn't adhering to the column standard. David On 5 February 2013 22:23, Robert Hanson wrote: > David, > > Where's your third coordinate? Are these 2D mol files? If so, they are not > identifying themselves as such in the second line. See, for example

Re: [Jmol-developers] MolFile errors

2013-02-05 Thread Robert Hanson
David, Where's your third coordinate? Are these 2D mol files? If so, they are not identifying themselves as such in the second line. See, for example, http://c4.cabrillo.edu/404/ctfile.pdf, particularly Chapters 2 and 4. These are rigidly formatted files. For example, the atom lines must be of the

Re: [Jmol-developers] MolFile errors

2013-02-03 Thread N David Brown
It's now clear why mine produces such an error: I'm not properly adhering to the fixed column width standard. I don't think the example I linked to should generate the error it does, however. David On 3 February 2013 22:21, N David Brown wrote: > File now attached for your convenience. > > Da

Re: [Jmol-developers] MolFile errors

2013-02-03 Thread N David Brown
File now attached for your convenience. David On 3 February 2013 22:21, N David Brown wrote: > After quickly writing a MolFile generator for some fictional structures, > the generated MolFile strings load acceptably in Jmol but produce several > error lines containing '0 0' is not a recognized

[Jmol-developers] MolFile errors

2013-02-03 Thread N David Brown
After quickly writing a MolFile generator for some fictional structures, the generated MolFile strings load acceptably in Jmol but produce several error lines containing '0 0' is not a recognized symbol. Any idea why? Here's an example file: unknown NDB/matchbOx/03022013221425 4 4 0 0 0 0 0 0 0