Kent, this is not an easy thing at all to describe. Basically a lot of
customization was done. I have now converted two other programs (JSpecView
and AztexViewer) The first took *me* a month, and the second took 10 days.
So I am getting better at it, but it is no simple task to describe how it
is
I maintain some software for the BioMagResBank (http://www.bmrb.wisc.edu/)
that's written in Java and incorporates Jmol. Because of the recent
issues with Java security, we're investigating converting the whole thing
to JavaScript. Hopefully we can use JSmol as a pretty direct substitute
for J
