[Jmol-users] v10pre6 unitcell bug - fixed

Geoff, > However there are still problems with unitcells where at least one of > alpha beta or gamma <> 90 degrees e.g. Be and S8 monoclinic. Have > perhaps alpha, beta or gamma got transposed in the Jmol10pre6 code? or > perhaps sin got switched for cos somewhere? - There's something not > right

Re: [Jmol-users] spin syntax

Phil wrote: > What is the script syntax to turn spin on and off -- I know -- spin on; > spin off. But that spins around one axis and I cannot seem to get it > to spin any other using scripting in either the applet or the > application. I have tried spin x on and spin y on, and even spin y 50 > o

Re: [Jmol-users] spin syntax

at 12.41p EDT on 2004 March 08 Monday Philip Bays said: > What is the script syntax to turn spin on and off -- I know -- spin on; > spin off. But that spins around one axis and I cannot seem to get it > to spin any other using scripting in either the applet or the > application. I have tried

[Jmol-users] spin syntax

What is the script syntax to turn spin on and off -- I know -- spin on; spin off. But that spins around one axis and I cannot seem to get it to spin any other using scripting in either the applet or the application. I have tried spin x on and spin y on, and even spin y 50 on. Phil J. Philip

[Jmol-users] RE: example animation in Jmol

at 3.55p EDT on 2004 March 08 Monday Thomson, Alan said: > I tried, Internet Explorer version 6.0,2800.1106 on XP service pack 2 > damn, it worked fine here! ;-) > A) It takes ages to download (Over a 100 Gbyte line) 3-4 min > my apologies. there is a speed issue in Jmol 10pre6 that we are cu

[Jmol-users] Re: applet for Win2000 with JIT

Jaim, > I think that the problem is that IExplorer does not refresh > crashed code. > > To test your 'modified' applet, I gave it a new name > (JmolAppleDebug.jar), so the browser had no other option than to load it > from new, and worked. [snip] > I need to find a way of really refreshing the app

[Jmol-users] New colors

I have posted a new set of proposed JmolColors on http://jmol.sf.net/colors Changes were made to a few atom colors. In particular: Nitrogen is a slightly different shade of blue fluorine is now a yellow-green Nickel is now a shade of green * I have never seen aqueous nickel ions, pleas

[Jmol-users] Re: example animation in Jmol

at 9.45a EDT on 2004 March 08 Monday timothy driscoll said: > hi all, > > > > shows an example of a Chime animation converted directly to Jmol > (version 10pre6, just released). fans of the Lehninger Chime > tutorials (a.k.a. Biochemi

[Jmol-users] example animation in Jmol

hi all, shows an example of a Chime animation converted directly to Jmol (version 10pre6, just released). fans of the Lehninger Chime tutorials (a.k.a. Biochemistry in 3D) may recognize this one from the beginning of the Bacteriorhodop

Re: [Jmol-users] Cyclohexane Tutoral Correction

Phil wrote: > A couple of comments. I apparently had a typo in the original address > I sent. It should be: > > http://www.saintmarys.edu/~pbays/DCC/DCC.htm Works fine for me on Linux. Looks very good. Miguel --- This SF.Net email

[Jmol-users] Cyclohexane Tutoral Correction

A couple of comments. I apparently had a typo in the original address I sent. It should be: http://www.saintmarys.edu/~pbays/DCC/DCC.htm The answer dialogue is incomplete and will be revised. The current version is simply code for me. Sorry. The tutorial should run in all browsers on L

Re: [Jmol-users] Cyclohexane tutorial

On Thu, 4 Mar 2004 21:56:28 -0500, Philip Bays wrote > I now have a tutorial up for intro organic students using a > combination of 2-d and Jmol models. Feel free to look at it and > give me feedback.All buttons should now work. > > www.saintmarys.edu/~pbays/DCC/CC.htm Philip, I get a "fi

Re: [Jmol-users] pre-6 color shapely

Paul wrote: > The command "color shapely" colors pink both thymines and cytosines. IMO > they should be distinguishable as they are in the drums color scheme > proposed here http://www.umass.edu/molvis/drums/ > (with the chime color scheme for shapely, some of my slightly color > blind students fou

Re: [Jmol-users] spacefill radius limits

Geoff wrote: > My experience with the Jmol 10 beta Applet is that > "spacefill" does not correctly render atom spheres > with a radius equal or greater than 2.00 Ångstrom (500 > RasMol units). [snip] > It would be good (for me at least) if Jmol also > supported spacefill up to 3.00/750, Implement

[Jmol-users] Re: Jmol on Win2000 with JIT

Jaime wrote: > I found problems when running Jmol 10pre6 on Windows 2000, IE 6.06, with > JIT enabled, With no JIT enabled, Jmol works fine. Good bug report. The console output is exactly what I need. There seem to be a lot of differences in the behavior of the various JVMs on various platforms