Thanks Miguel for a truly excellent and clear summary!
Plug-in
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To understand a plug-in it is helpful to think back to the helper
application. A helper application is not associated with a specific web
page. Rather, it is associated with a specific file type, a specific
mime-type. The web
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On Thursday 18 March 2004 09:24, Rzepa, Henry wrote:
Thanks Miguel for a truly excellent and clear summary!
I would like to add a possible option:
http://www.mozilla.org/projects/blackwood/java-plugins/
It's been around for years now, but it is
The web browser will launch MS Word every time it sees a
document with the mime-type 'application/msword'.
Can I add only to this section that MIME types were never originally
intended for use within browsers; they were supposed to be used only for
email
Very true.
In the early days
Egon wrote:
I would like to add a possible option:
http://www.mozilla.org/projects/blackwood/java-plugins/
It's been around for years now, but it is not mainstream (yet)...
Pluglets: mozilla plugins written in Java.
I have absolutely no idea what the current status is of this project,
Robert wrote:
But we have lots of talented
computer science graduate students here, all looking for challenging
master's projects. Lots of free labor! I'll ask around.
If you can find a graduate student that is self-motiviated and if you can
provide a small amount of management from your
Found a mechanism to wrap the Jmol.jar into an application on OS X
(thus converting it to jmol.app ) which CAN be treated as a proper
application. Use /Developer/Applications/Java Tools/Jar Bundler
and indicate the main class as org.openscience.jmol.app.Jmol
Whilst I doubt its worth
Rzepa, Henry sent [10.43a gmt 2004 March 18 Thursday] :
Found a mechanism to wrap the Jmol.jar into an application on OS
X (thus converting it to jmol.app ) which CAN be treated as a
proper application. Use /Developer/Applications/Java Tools/Jar
Bundler and indicate the main class as
Rzepa, Henry sent [10.43a gmt 2004 March 18 Thursday] :
Found a mechanism to wrap the Jmol.jar into an application on OS
X (thus converting it to jmol.app ) which CAN be treated as a
proper application. Use /Developer/Applications/Java Tools/Jar
Bundler and indicate the main class as
like in RasMol, if I said:
set picking distance
Atom #1: [ARG]97:E.NH2 (1062)
Atom #2: [ARG]173:E.NH2 (1722)
Distance [ARG]97:E.NH2 - [ARG]173:E.NH2 = 19.211
Are you saying that you get all this text sent to you as a single
string?
yes, in RasMol
But does it happen in Chime?
If not, then I
Jan Miguel wrote:
with 1c2w I got the following error:
3 letter residue specification expected : select [5MC]2498B;
and there are others, e.g. [5MU]1939B, [7MG]2069B, [1MA]2030B
Which PDB file?
Sorry ... I see ... 1c2w
Miguel
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At 3/17/04, Robert B. Grossman wrote:
By the way, MDL confirms that they won't release the source code for
Chime, even on a confidential basis. I don't understand why not; it's no
good to them anymore. But it's their property to do with what they will,
I suppose.
One reason MDL has given in
It is a shame to relegate this truly superb tutorial (Thanks, Miguel!!) to
the email list. Because of the high volume on jmol-users, I don't think it
works well for looking up things (but maybe I don't know how?).
I think the jmol.sourceforge.net site needs a place where people can submit
and
Bob wrote:
Henry, can you give detailed directions for someone who doesn't know
anything about Java, beginning with where I get the developer kit and
how I install it?
Here are Henry's instructions ... along with a Step 0 and Step 5 from Tim
Driscoll.
Miguel
step 0.
a. if you installed
At 3/18/04, Miguel Howard wrote:
like in RasMol, if I said:
set picking distance
Atom #1: [ARG]97:E.NH2 (1062)
Atom #2: [ARG]173:E.NH2 (1722)
Distance [ARG]97:E.NH2 - [ARG]173:E.NH2 = 19.211
Are you saying that you get all this text sent to you as a single
string?
yes, in RasMol
But does it
Mistyped the web address!
I have followed the instructions about making jmol into a Mac
application. I have placed the result at the following web address for
anyone interested in downloading. No guarantees :)
http://www.saintmarys.edu/~pbays/jmol/jmol.htm
Now when someone teaches Opera or
Hey folks,
OK, I downloaded XCode and created Jmol.app per Tim Henry's
instructions, and it worked! So now I have a Jmol application that
MacOS X recognizes as an application.
Now the bad news.
Netscape 7.1: I could create a MIME type and extension and give the
browser instructions as to
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