[Jmol-users] Gamess atomic charge?

2004-08-27 Thread Miguel
Rajarshi wrote: > Thanks. I've attached the input file for the gamess run (water.inp), the > output file (water.dat) as well as stdout (piped to a file, water.out) Rajarshi, The names file you provided contains the following: ATOM ATOMIC COORDINATES (BOHR) CH

Re: [Jmol-users] jmol related workflow question

2004-08-27 Thread Egon Willighagen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On Friday 27 August 2004 19:20, Rajarshi Guha wrote: > Has anybody faced this type of situation before? I would rathr not have > students draw molecules in one package, move the files aorund, write job > scripts and then get output and view that - too

[Jmol-users] Re: Animating vibs. in JMol

2004-08-27 Thread Miguel
> How about doing the same for Spartan output please Miguel? Sure, Egon or I will do it ... the spartan output file that you attached to your message seemed straightforward. Miguel --- This SF.Net email is sponsored by BEA Weblogic Workshop

[Jmol-users] jmol related workflow question

2004-08-27 Thread Rajarshi Guha
Hi, this is not really Jmol question but as it involes the use of it and as there are teachers on this list I though I'd post here This semester I'm TA'ing a pchem lab and one of the experiments involves spectra. Part of the experiment involves calculations of vibration modes usinga software and

Re: [Jmol-users] vibration animations from Gamess output

2004-08-27 Thread Miguel
Raj wrote: > I'm interested in using the output of a gamess frequency job to > animate vibrational modes. I'm using gamess (Sep 6, 2001, R5.x) and I > got a .dat file as well as output to the screen. When I try and load the > .dat file into Jmol (v10) I get an unrecognized file format error. Jm

Re: [Jmol-users] vibration animations from Gamess output

2004-08-27 Thread E.L. Willighagen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On Friday 27 August 2004 17:19, Rajarshi Guha wrote: > I'm interested in using the output of a gamess frequency job to > animate vibrational modes. I'm using gamess (Sep 6, 2001, R5.x) and I > got a .dat file as well as output to the screen. When I t

[Jmol-users] vibration animations from Gamess output

2004-08-27 Thread Rajarshi Guha
Hi, I'm interested in using the output of a gamess frequency job to animate vibrational modes. I'm using gamess (Sep 6, 2001, R5.x) and I got a .dat file as well as output to the screen. When I try and load the .dat file into Jmol (v10) I get an unrecognized file format error. Is this because my

Re: [Jmol-users] Bug in SHELX reader

2004-08-27 Thread Miguel
> Apologies if I wasn't clear. My original report (failure to read in > a SHELX file) referred to Jmol v9. OK ... I thought that you were on v10. > Maybe I'm missing something, but I can't see *any* unit > cell display functionality in the pre13 version I just > downloaded. It reads in the ".res

Re: [Jmol-users] Bug in SHELX reader

2004-08-27 Thread Miguel
Egon wrote: >> There is some support for unit cell display in v10 ... perhaps not as >> much >> as v9. Please tell me what things you want. > > The support in v10 matches that off v9... Display of unit cell is not > turned on by default, however... > > Miguel, would it be difficult to have one of t

Re: [Jmol-users] Bug in SHELX reader

2004-08-27 Thread E.L. Willighagen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On Friday 27 August 2004 14:05, Miguel wrote: > > I have tried this, and v.10 does read in the shelxl file correctly. > > Unfortunately this version appears to have lost all of the crystal > > unit cell display features which were the reason I was inte

Re: [Jmol-users] Bug in SHELX reader

2004-08-27 Thread Miguel
> I have tried this, and v.10 does read in the shelxl file correctly. > Unfortunately this version appears to have lost all of the crystal > unit cell display features which were the reason I was interested > in Jmol un the first place. Are there any plans to reinstate these? Now I am a little c