Re: [Jmol-users] Waiting

2004-09-13 Thread Bob Hanson
hack. Philip Bays wrote: Being unable to do this in a sophisticated, delicate way, I got out the sledge hammer. function wait(){ document.getElementById("open").innerHTML = "Applets are Loading"; setTimeout('newProblem();',4000); } Of course, if someone is connected by modem, 4000 may not

[Jmol-users] Waiting

2004-09-13 Thread Philip Bays
Being unable to do this in a sophisticated, delicate way, I got out the sledge hammer. function wait(){ document.getElementById("open").innerHTML = "Applets are Loading"; setTimeout('newProblem();',4000); } Of course, if someone is connected by modem, 4000 may not be a long enough wait, but I wil

[Jmol-users] deprecated style/label

2004-09-13 Thread Miguel
David wrote: > I am interested in rendering compounds as wireframe > with labels. I saw in the documentation that these > params (style /label) are deprecated in v10 - and > probably the reason I can't make them work. > > Is there equivalent functionality / params I could use? > > Also is there an

Re: [Jmol-users] animation

2004-09-13 Thread Miguel
Hans wrote: > After measuring, playing animations (from geometry optimizations or MD) > is the second-most important thing in my daily work with Jmol. I use > the Jmol application exclusively (as opposed to the applet). I am glad that you find Jmol useful. > Having available in Jmol one of the e

Re: [Jmol-users] animation

2004-09-13 Thread Hans Martin Senn
On 13 Sep 2004, at 20:05, Miguel wrote: Jules wrote: I have successfully tried jmol10pr13 on a simple molecular animation. It is very clumsy to go through frame by frame. Is there anyway to get back the animation panel that went with jmol9. Adding additional UI functionality for supporting animatio

Re: [Jmol-users] Waiting

2004-09-13 Thread Philip Bays
I don't think so. But I am a novice. I had so many iterations of the program last week, trying to get the loading to work, that I was not sure what was where. Phil On Sep 13, 2004, at 1:52 PM, Bob Hanson wrote: Phil, is there really a difference between onLoad and onload? Where? in the tag?

Re: [Jmol-users] Waiting

2004-09-13 Thread Bob Hanson
Phil, is there really a difference between onLoad and onload? Where? in the tag? Bob Philip Bays wrote: I now have a couple of observations. 1. onLoad works a lot better than onload --- sorry about that. -- Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107 Professor of Chemistry, St. Olaf Colleg

Re: [Jmol-users] Waiting

2004-09-13 Thread Philip Bays
Well, yes and no. The problem is not yet solved. I am looking at the following javascript which is an adaptation of one sent by Jaime. It does not work. If fact it stops everything. If I put an alert in the first line of newProblem() I never see it. I am better off with nothing and just usi

[Jmol-users] Re: Animating vibs. in JMol

2004-09-13 Thread Miguel
> How about doing the same for Spartan output please Miguel? Jmol v10pre13f has initial support for text output from Spartan. It only supports atoms and vibration vectors. It has only been tested on one Spartan file. Miguel - Molecular Visualization www.jmol.org [EMAIL PROTECTED] -

Re: [Jmol-users] Waiting

2004-09-13 Thread Miguel
> I have now had a chane to look at this on both a PC and a Mac. We are > dealing with a platform issue I think at this point. Your hack works > fine on the PC, but not on my Mac. I will continue to look at where > the problem lies and then hack another piece of code. Phil, Was the link that

Re: [Jmol-users] animation

2004-09-13 Thread Miguel
Jules wrote: > I have successfully tried jmol10pr13 on a simple molecular animation. > It is very clumsy to go through frame by frame. Is there anyway to get > back the animation panel that went with jmol9. Adding additional UI functionality for supporting animation is on the list-of-things-to-do.

[Jmol-users] animation

2004-09-13 Thread Jules Moskowitz
I have successfully tried jmol10pr13 on a simple molecular animation. It is very clumsy to go through frame by frame. Is there anyway to get back the animation panel that went with jmol9. Professor Jules W. Moskowitz Chemistry Department New York University 100 Washington Square East New York, N

Re: [Jmol-users] Waiting

2004-09-13 Thread Bob Hanson
darn! Good luck. Philip Bays wrote: Bob: I have now had a chane to look at this on both a PC and a Mac. We are dealing with a platform issue I think at this point. Your hack works fine on the PC, but not on my Mac. I will continue to look at where the problem lies and then hack another piece

Re: [Jmol-users] JmolShell - A simple shell for Jmol presentations

2004-09-13 Thread Miguel
> > > --On Monday, September 13, 2004 12:06 PM -0400 Miguel <[EMAIL PROTECTED]> > wrote: > >> Your file Support/JmolShell.js has some bad characters in it on lines >> 111 >> and 112. That prevents me from running. > > Hmmm > > The code around there is: > > === > // Used by H

Re: [Jmol-users] JmolShell - A simple shell for Jmol presentations

2004-09-13 Thread Craig T. Martin
--On Monday, September 13, 2004 12:06 PM -0400 Miguel <[EMAIL PROTECTED]> wrote: Your file Support/JmolShell.js has some bad characters in it on lines 111 and 112. That prevents me from running. Hmmm The code around there is: === // Used by HelpHTML definition (only) func

Re: [Jmol-users] JmolShell - A simple shell for Jmol presentations

2004-09-13 Thread Miguel
> First, thanks to Miguel for his help in getting my JmolShell package > together. Briefly, this package is for use by students in a Biomolecular > Structure course in the preparation of Jmol-based presentations on "their > favorite protein." It is trying to be as user-friendly as possible without

Re: [Jmol-users] Waiting

2004-09-13 Thread Philip Bays
Bob: I have now had a chane to look at this on both a PC and a Mac. We are dealing with a platform issue I think at this point. Your hack works fine on the PC, but not on my Mac. I will continue to look at where the problem lies and then hack another piece of code. Appreciate your help!!

[Jmol-users] JmolShell - A simple shell for Jmol presentations

2004-09-13 Thread Craig T. Martin
First, thanks to Miguel for his help in getting my JmolShell package together. Briefly, this package is for use by students in a Biomolecular Structure course in the preparation of Jmol-based presentations on "their favorite protein." It is trying to be as user-friendly as possible without requ

Re: [Jmol-users] another Jmol based site

2004-09-13 Thread Miguel
Jaime wrote: > We are proud of having Jmol as a key element for molecule > visualization in our new server HyPare. > > HyPare is at http://bip.weizmann.ac.il/hypare/ Very good. I will add this to the list of web sites using Jmol. Miguel ---