Re: [Jmol-users] coloring peptide chains

2004-09-29 Thread Miguel
> Miguel, > I was hasty in posting my question, because within the hour I > rediscovered how I had done this in Chime, and it works fine in Jmol. > My script syntax is: select protein; select *A; color atoms blue; > select *B; color atoms red; (or whatever colors you wish). > However, I now have

Re: [Jmol-users] coloring peptide chains

2004-09-29 Thread timothy driscoll
On 2004-09-29 (16:26) William Reusch wrote: >However, I now have a different problem. I wanted to use this >technique in showing the different segments of hemoglobin, but the >pdb file for this compound appears to be too large for Jmol to >handle. It loads in Chime, but does not display in Jmol. I

Re: [Jmol-users] coloring peptide chains

2004-09-29 Thread timothy driscoll
On 2004-09-29 (14:56) William Reusch wrote: >Hello Again, > >When displaying structures composed of two or more peptide chains, >e.g. insulin, the chains may be given different colors by the color >chain command. In both Chime and Jmol the colors are designated by >default. Is it possible to assig

Re: [Jmol-users] coloring peptide chains

2004-09-29 Thread timothy driscoll
On 2004-09-29 (15:17) Miguel wrote: >Bill wrote: >>When displaying structures composed of two or more peptide chains, >>e.g. insulin, the chains may be given different colors by the color >>chain command. In both Chime and Jmol the colors are designated by >>default. Is it possible to assign other

Re: [Jmol-users] coloring peptide chains

2004-09-29 Thread William Reusch
Miguel, I was hasty in posting my question, because within the hour I rediscovered how I had done this in Chime, and it works fine in Jmol. My script syntax is:  select protein;  select *A; color atoms blue;  select *B; color atoms red; (or whatever colors you wish). However, I now have a diff

Re: [Jmol-users] coloring peptide chains

2004-09-29 Thread Miguel
Bill wrote: > When displaying structures composed of two or more peptide chains, e.g. > insulin, the chains may be given different colors by the color chain > command. In both Chime and Jmol the colors are designated by default. Is > it possible to assign other colors to the chains? I have not foun

[Jmol-users] coloring peptide chains

2004-09-29 Thread William Reusch
Hello Again, When displaying structures composed of two or more peptide chains, e.g. insulin, the chains may be given different colors by the color chain command. In both Chime and Jmol the colors are designated by default. Is it possible to assign other colors to the chains? I have not found

Re: [Jmol-users] read a file and give it to jmol Applet

2004-09-29 Thread Miguel
> Jan, > > Thanks for the great hint. I am able to figure out some ways using the > example you gave. > > Could u help me in making Jmol Applet read a file on the client and > display it. Or should i write my own code to read a file on the > client and send it to JMol Applet. I wanted to wether t

Re: [Jmol-users] read a file and give it to jmol Applet

2004-09-29 Thread Miguel
> How can I read a pdb or cml file and give it to jmol applet instead of > giving a file name it the param of applet tag? The script command ´load´ will load a pdb/cml/* file off of the server load foo.xyz # loads foo.xyz from the same directory as the .html # page containing the applet load ..

Re: [Jmol-users] show center

2004-09-29 Thread Miguel
> Olaf is hospitalized today. What you want is: > > given T, > > what are Rx, Ry, and Rz such that > > Rx * Ry * Rz = T > > Right? Correct! I wish I could have said that :-) > I'll have to think about that. I'm not sure there's a unique solution. I am sure that there is not a unique solution. B

Re: [Jmol-users] read a file and give it to jmol Applet

2004-09-29 Thread Old Address
Siv Chand Koripella wrote: Jan, Thanks for the great hint. I am able to figure out some ways using the example you gave. Could u help me in making Jmol Applet read a file on the client and display it. Or should i write my own code to read a file on the client and send it to JMol Applet. I wanted t

Re: [Jmol-users] read a file and give it to jmol Applet

2004-09-29 Thread Siv Chand Koripella
Jan, Thanks for the great hint. I am able to figure out some ways using the example you gave. Could u help me in making Jmol Applet read a file on the client and display it. Or should i write my own code to read a file on the client and send it to JMol Applet. I wanted to wether there some kind

Re: [Jmol-users] read a file and give it to jmol Applet

2004-09-29 Thread Old Address
Egon Willighagen wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On Wednesday 29 September 2004 08:26, Siv Chand Koripella wrote: How can I read a pdb or cml file and give it to jmol applet instead of giving a file name it the param of applet tag? Hi Siv, could you elaborate on the env

Re: [Jmol-users] read a file and give it to jmol Applet

2004-09-29 Thread Old Address
Siv Chand Koripella wrote: How can I read a pdb or cml file and give it to jmol applet instead of giving a file name it the param of applet tag? it has to come from the same source protocol://server:port/ as the applet, than you may load it with zap;load ./relativePath/file.name; e.g. http://ww

Re: [Jmol-users] read a file and give it to jmol Applet

2004-09-29 Thread Egon Willighagen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On Wednesday 29 September 2004 08:26, Siv Chand Koripella wrote: > How can I read a pdb or cml file and give it to jmol applet instead of > giving a file name it the param of applet tag? Hi Siv, could you elaborate on the environment? I think, for app