Re: [Jmol-users] isolated atom representation when cpk=off

2005-01-05 Thread Miguel
>> Q: would that solve your problem? > > so something like: if a "wireframe on" checkbox is clicked my action > script is > select all; > cpk off; > wireframe .1; > select bondcount==0; > (display atoms as crosses) > > ?? I forgot that part of this is already done. Jmol supports a predefined set

Re: [Jmol-users] applet window size

2005-01-05 Thread Miguel
> Why the applet window has to be square? Technical constraints? It would be > nice to > be able to display some elongated molecules in a rectangular window. There is no technical reason why the applet window has to be square. In general, I recommend that it be square for the following reason ..

Re: [Jmol-users] isolated atom representation when cpk=off

2005-01-05 Thread Miguel
Rich wrote: > Is there a way to have unconnected atoms automatically represented as > crosses (or something) when cpk=off? As I understand it, the problem you are trying to solve is that unconnected atoms are not visible with 'cpk off; wireframe on' There is currently no mechanism to represent t

Re: [Jmol-users] isolated atom representation when cpk=off

2005-01-05 Thread rgb
> Rich wrote: > >> Is there a way to have unconnected atoms automatically represented as >> crosses (or something) when cpk=off? > > As I understand it, the problem you are trying to solve is that > unconnected atoms are not visible with 'cpk off; wireframe on' > > There is currently no mechanism t

[Jmol-users] isolated atom representation when cpk=off

2005-01-05 Thread rgb
Is there a way to have unconnected atoms automatically represented as crosses (or something) when cpk=off? Rich --- The SF.Net email is sponsored by: Beat the post-holiday blues Get a FREE limited edition SourceForge.net t-shirt from ThinkGeek.

[Jmol-users] applet window size

2005-01-05 Thread Sergio Ceroni da Silva
Why the applet window has to be square? Technical constraints? It would be nice to be able to display some elongated molecules in a rectangular window. Thanks. Sérgio. == Dr. Sérgio Ceroni da Silva Centro de Biotecnologia - Universidade Federal do Rio Grande do

[Jmol-users] Re: measure angstroms

2005-01-05 Thread Miguel
> Maybe I overlooked something, but I can't find find the script command > that sets the distance measurements from the default nm to angstroms. > There is menu entry that does this, Popup menu scripts are in org.openscience.jmol.ui.JmolPopupStructure.properties > but shouldn't 'set measure angst