[Jmol-users] Re: problem with 'select within (30.0,MODEL=2);

2005-02-25 Thread Miguel
>> It now is already publicalty available, it workes with old version >> Jmol >> (10pre10), and Rasmol based Chime also, understand this. > > Hmmm ... well if it is true that Rasmol has this behavior for the 'within' > operator then I have introduced an incompatibility. I will investigate > next

[Jmol-users] Spartan 04 for the Mac

2005-02-25 Thread Philip Bays
For those who use Spartan on the Mac -- the new version has been released.There are some cute things in it, one of which relates to Jmol. If you create an animation in spartan, you can export it as a Jmol recognizable series of xyz coordinates that will immediately play in Jmol. It is buried

Re: [Jmol-users] Close one window and they all close

2005-02-25 Thread Miguel
> I was using the Jmol stand-alone application in class today, and I > was pleased to find that several Jmol windows could be opened at the > same time. I was surprised, however, when I closed one window and they > all closed. Luckily, I discovered this before class. Is this how Jmol > behave

Re: [Jmol-users] Re: Several applets in a page fail to load randomly

2005-02-25 Thread Miguel
> I have now put the page in a web server and it does NOT fail there, > only in local access (hard disk). Sounds like another vote for always working from a local web server ;-) Miguel --- SF email is sponsored by - The IT Product Guide Read

[Jmol-users] Close one window and they all close

2005-02-25 Thread Christopher Masi
I was using the Jmol stand-alone application in class today, and I was pleased to find that several Jmol windows could be opened at the same time. I was surprised, however, when I closed one window and they all closed. Luckily, I discovered this before class. Is this how Jmol behaves everyw

Re: [Jmol-users] Re: Several applets in a page fail to load randomly

2005-02-25 Thread Bob Hanson
Sí, bueno. Y el principio (?) es muy rápido. Bob Angel Herraez wrote: Hi Thanks for the interest. Sorry I forgot to mention the OS; I am using Firefox 1.0 under winXP [ Mozilla/5.0 (Windows; U; Windows NT 5.1; es-ES; rv:1.7.5) Gecko/20041108 Firefox/1.0 ] I have now put the page in a web server

[Jmol-users] Re: Several applets in a page fail to load randomly

2005-02-25 Thread Angel Herraez
Hi Thanks for the interest. Sorry I forgot to mention the OS; I am using Firefox 1.0 under winXP [ Mozilla/5.0 (Windows; U; Windows NT 5.1; es-ES; rv:1.7.5) Gecko/20041108 Firefox/1.0 ] I have now put the page in a web server and it does NOT fail there, only in local access (hard disk). Anyhow,

Re: [Jmol-users] Liste

2005-02-25 Thread Nicolas Vervelle
Title: Liste To unsubscribe ...   Pour se désinscrire, il faut aller sur la page http://lists.sourceforge.net/lists/listinfo/jmol-users et saisir l'adresse mail dans le dernier champ en bas et cliquer sur "Edit Options" Dans la fenêtre suivante, il faut saisir le mot de passe dans le champ en

Re: [Jmol-users] Re: bonds & angles

2005-02-25 Thread Bob Hanson
I recommend taking a look at http://www.stolaf.edu/people/hansonr/jmol/docs/examples/callback.htm and http://www.stolaf.edu/people/hansonr/jmol/docs/?search=callback It's the "set picking" command you need there. Note that when, for example, you set picking angle, you still get the callback from t

Re: [Jmol-users] Several applets in a page fail to load randomly

2005-02-25 Thread Bob Hanson
would you be willing to share the URL to this page with us? Angel Herraez wrote: Hi I have set a page with 4 applets. Every time I (re)load the page, one or more of them don't load, but the Java "X" icon appears instead. If i reload, a different applet fails to load. Only rarely I getthe 4 of th

[Jmol-users] Liste

2005-02-25 Thread viviane guillaume
Title: Liste Pouvez me désinscrire s'il vous plaît ? Je reçoi trop de mails auxquels je ne comprends rien. Je ne parle pas anglais. Merci. Avec traducteur, Can to me désinscrire please? I reçoi too many malls to which I do not include/understand anything. I do not speak English. Thank you. --

Re: [Jmol-users] Several applets in a page fail to load randomly

2005-02-25 Thread Miguel
> Hi > I have set a page with 4 applets. Every time I (re)load the page, one > or more of them don't load, but the Java "X" icon appears instead. If > i reload, a different applet fails to load. Only rarely I getthe 4 of > them correct. > Any experience or possible cause for this? > [ Jmol 10.00 a

Re: [Jmol-users] bonds & angles

2005-02-25 Thread Miguel
> I suspect there is an obvious answer to this but ... how can I get bond > lengths and angles using jmol? >From the user-interface ... double click on an atom to drop an anchor. double click on a target and you will get a length. double click to drop an anchor. single click on an intermediate

[Jmol-users] Several applets in a page fail to load randomly

2005-02-25 Thread Angel Herraez
Hi I have set a page with 4 applets. Every time I (re)load the page, one or more of them don't load, but the Java "X" icon appears instead. If i reload, a different applet fails to load. Only rarely I getthe 4 of them correct. Any experience or possible cause for this? [ Jmol 10.00 and Jmol.js ]

[Jmol-users] Re: bonds & angles

2005-02-25 Thread Angel Herraez
Hi, Vicki I am trying to do the same. I posted on feb.24 about "implementing PickCallBack with Jmol.js". Please, look at Bob Hanson's reply. I will try to follow his example in order to obtain the distance and angle information. It seems that PickCallBack only gives atom info, so for distance, a

Re: [Jmol-users] set zoom center false

2005-02-25 Thread rgb
On Thu, February 24, 2005 8:49 am, Frieda S. Reichsman said: > > On Feb 23, 2005, at 10:43 AM, Miguel wrote: Q: Frieda, remind me once again what you are trying to accomplish ... >>> >>> I usually fade out sections of a macromolecule to focus on one part, >>> and ideally I want that one part t

Re: [Jmol-users] geometry

2005-02-25 Thread Bob Hanson
well, you ARE missing a right double-quote on that first line Maybe? James Raftery wrote: Hello, I have just been trying to get some geometric information out on the web using the code below: jmolhtml("geometry); jmolCheckbox("set picking on","set picking off","pick"); jmolRadioGroup([ [

Re: [Jmol-users] bonds & angles

2005-02-25 Thread Bob Hanson
define "get" Vickie Mckee wrote: I suspect there is an obvious answer to this but ... how can I get bond lengths and angles using jmol? * Vickie McKee Chemistry Department Loughborough University Loughborough Leics LE11 3TU email: [EMAIL PROTECTED

Re: [Jmol-users] implementing PickCallBack with Jmol.js

2005-02-25 Thread Bob Hanson
For now, the best thing to do is follow some leads. You can check at http://www.stolaf.edu/people/hansonr/jmol/docs/examples/callback.htm to see how those work. Really it's not too hard. I can help if you need it. Bob Angel Herraez wrote: Hi I am using JmolApplet 10.00 with Jmol.js Is there a way

Re: [Jmol-users] set zoom center false

2005-02-25 Thread Frieda S. Reichsman
On Feb 23, 2005, at 10:43 AM, Miguel wrote: I would like to see an example of this, if possible. I can envision what you mean, but how much movement is there? -- perhaps it is an acceptable amount? Sometimes small defects such as this can be hidden (i.e., human eye distracted) by the move or moveTo

[Jmol-users] bonds & angles

2005-02-25 Thread Vickie Mckee
I suspect there is an obvious answer to this but ... how can I get bond lengths and angles using jmol? * Vickie McKee Chemistry Department Loughborough University Loughborough Leics LE11 3TU email: [EMAIL PROTECTED] http://www-staff.lboro.ac.uk/~

Re: [Jmol-users] implementing PickCallBack with Jmol.js

2005-02-25 Thread Miguel
> Hi > I am using JmolApplet 10.00 with Jmol.js > Is there a way to use pickCallback, or must I code the applet by hand > without using Jmol.js? > The main reason for this question is that "set picking ident" puts > the atom ID on the status line, but "set picking distance" does not > put the resp