Re: [Jmol-users] Re: Picking and measuring

Miguel wrote: G'day, > I'm a Jmol newbie. Could someone please explain this to me? Apologies for not making it clearer - I was asking for an additional way of performing measurements to be added to both the Jmol applet and application. Brian's comments echo my users' experience; it was primarily ne

Re: [Jmol-users] Error when running jmol app

> Lovely. That worked well. However, a general question - does it tell you > this on any of the assessable java sites? I have not seen anything like > this, but of course I could be wrong. Unfortunately, I don't think I have ever seen this documented on general java sites. > I also created JMOL_H

Re: [Jmol-users] Error when running jmol app

Hi again, Miquel, On Tue, Mar 15, 2005 at 08:54:37PM -0500, Miguel wrote: > >> However, the java runtime on your system is very old ... it needs to be > >> updated. > > > > I realised this. I found I had the rpm.bin for j2re1.4.0_02. I think I > > downloaded it long ago with an old version of jmol

Re: [Jmol-users] Reading a G98 optimisation output file with jmol.js

> Following this advice I came up with the following which seems to work. > Frame 1 is the input orientation, so we start at frame 2, the standard > orientation. The button then moves on two frames. The rewind button goes > back to frame 2. Hope this helps other Gaussian users. > > > > jmolSetApp

Re: [Jmol-users] Re: Picking and measuring

> G'day, > > > I'm a Jmol newbie. Could someone please explain this to me? > > Apologies for not making it clearer - I was asking for an additional way > of > performing measurements to be added to both the Jmol applet and > application. > > Brian's comments echo my users' experience; it was prim

Re: [Jmol-users] Error when running jmol app

>> However, the java runtime on your system is very old ... it needs to be >> updated. > > I realised this. I found I had the rpm.bin for j2re1.4.0_02. I think I > downloaded it long ago with an old version of jmol which I never > followed through with. I installed this and it put everything in > /

Re: [Jmol-users] Reading a G98 optimisation output file with jmol.js

On Tue, Mar 15, 2005 at 07:29:24PM -0500, Miguel wrote: > > > I would like to animate the steps of a G98 optimisation so the user can > > click though the structures at each step of the optimisation. However > > jmol.js reads both the input geometry and the standard orientation > > geometry at eac

[Jmol-users] Re: Picking and measuring

G'day, > I'm a Jmol newbie. Could someone please explain this to me? Apologies for not making it clearer - I was asking for an additional way of performing measurements to be added to both the Jmol applet and application. Brian's comments echo my users' experience; it was primarily new users who

Re: [Jmol-users] Picking and measuring

On Tue, Mar 15, 2005 at 07:24:44PM -0500, Miguel wrote: > > > On Tue, Mar 15, 2005 at 08:56:02AM +0800, Chris Pudney wrote: > >> G'day, > >> > >> When the "picking" mode is one of distance, angle or torsion > >> would > >> it > >>

Re: [Jmol-users] Error when running jmol app

Hi Miquel, On Tue, Mar 15, 2005 at 07:13:00PM -0500, Miguel wrote: > >> > Does this mean there is something wrong with my java support on this > >> > machine? If so, what? > >> > >> The problem is that the Kaffe JVM does not provide Swing at this moment. > >> Jmol requires Swing and thus the Sun J

Re: [Jmol-users] Reading a G98 optimisation output file with jmol.js

> I would like to animate the steps of a G98 optimisation so the user can > click though the structures at each step of the optimisation. However > jmol.js reads both the input geometry and the standard orientation > geometry at each step. These of course can be very different, so > stepping throu

Re: [Jmol-users] Picking and measuring

> On Tue, Mar 15, 2005 at 08:56:02AM +0800, Chris Pudney wrote: >> G'day, >> >> When the "picking" mode is one of distance, angle or torsion >> would >> it >> be possible to have measurement rendered on the structure (rather than >

[Jmol-users] Reading a G98 optimisation output file with jmol.js

I would like to animate the steps of a G98 optimisation so the user can click though the structures at each step of the optimisation. However jmol.js reads both the input geometry and the standard orientation geometry at each step. These of course can be very different, so stepping through the stru

Re: [Jmol-users] Error when running jmol app

>> > Does this mean there is something wrong with my java support on this >> > machine? If so, what? >> >> The problem is that the Kaffe JVM does not provide Swing at this moment. >> Jmol requires Swing and thus the Sun JVM. > > I get very confused about Java nomenclature. What is JVM? JVM = Java

Re: [Jmol-users] Picking and measuring

On Tue, Mar 15, 2005 at 08:56:02AM +0800, Chris Pudney wrote: > G'day, > > When the "picking" mode is one of distance, angle or torsion > would it > be possible to have measurement rendered on the structure (rather than just > e

Re: [Jmol-users] Error when running jmol app

On Mon, Mar 14, 2005 at 09:38:19AM +0100, Egon Willighagen wrote: > On Monday 14 March 2005 01:47 am, Brian Salter-Duke wrote: > > I have got the jmol application working OK on a SGI, but I would like to > > run it on my own linux box. When I type "./jmol" in the jmol directory, > > it reports:- >

Re: [Jmol-users] Maximum Zoom?

> For my current needs, bumping the zoom up another 5X from whatever it is > currently would probably suffice, but others might need more. At the > moment, the ribosome is the biggest structure I've looked at, but of > course > with progress, that will change. It looks like to me that the zoom is