Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Nicolas Vervelle
Works for me, great :) Bob Hanson wrote: Problem solved. The problem had to do with my using multiple document.write() calls while creating the new pop-up window HTML. When I collected all the write calls into one single call, the problem disappeared (for me). Please double-check at http://

Re: [Jmol-users] Re: [Jmol-developers] DOC - isosurface

2005-08-28 Thread Bob Hanson
not any more. Miguel wrote: I've given an initial stab at isosurface documentation. http://www.stolaf.edu/people/hansonr/jmol/docs/#.isosurface That's about it for the week for me. And I even used "style=clear:right" ! :) Looks good. However, note that there is an 'alert' box that shows u

Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Bob Hanson
I believe adding the obscure "defer=no" to the

Re: [Jmol-users] decimal places in measurements

2005-08-28 Thread Miguel
> Is there a way to limit the number of decimal places shown next to > monitor lines? I would like only one (can't find this documented, if it > is please let me know). There is currently no mechanism to support this. Miguel --- SF.Net emai

Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Eric Martz
Here are my test results, Bob: Firefox on Win98: works fine. Netscape 4.8 (I know, not supported, but sometimes useful to give a meaningful javascript error report): first try, no errors, no contents to window. Second try, worked fine. Third, 4th, Nth tries, empty window (except for the first

Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Bob Hanson
Problem solved. The problem had to do with my using multiple document.write() calls while creating the new pop-up window HTML. When I collected all the write calls into one single call, the problem disappeared (for me). Please double-check at http://www.stolaf.edu/people/hansonr/jmol/docs usin

Re: [Jmol-users] Re: [Jmol-developers] DOC - isosurface

2005-08-28 Thread Miguel
> I've given an initial stab at isosurface documentation. > > http://www.stolaf.edu/people/hansonr/jmol/docs/#.isosurface > > That's about it for the week for me. > And I even used "style=clear:right" ! :) Looks good. However, note that there is an 'alert' box that shows up when one opens the de

Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Eric Martz
At 8/28/05, you wrote: >> http://www.stolaf.edu/people/hansonr/jmol/docs/#.atom%20expressions >> then click on "in a new window using 1blu.pdb" You should see a message "creating Jmol Applet", and the page should load. All I added was an alert in _jmolApplet(). Believe it or not, this is the ON

Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Eric Martz
At 8/28/05, you wrote: http://www.stolaf.edu/people/hansonr/jmol/docs/?nojmoljs Yes, Bob, that appears to work in IE on Win98 for me. Thanks for the quick responses! Eric Martz, Professor Emeritus, Dept Microbiology University of Massachusetts, Amherst MA US http://www.umass.edu/molv

Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Bob Hanson
I believe that I have a work-around for the IE bug. Please try this: >> http://www.stolaf.edu/people/hansonr/jmol/docs/#.atom%20expressions >> then click on "in a new window using 1blu.pdb" You should see a message "creating Jmol Applet", and the page should load. All I added was an alert in _jm

Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Bob Hanson
This appears to be a fluke in Jmol.js or how these pages load Jmol.js. I'm not sure. I will follow up. Please try: http://www.stolaf.edu/people/hansonr/jmol/docs/?nojmoljs This flag tells the documentation not to use Jmol.js when opening a new window. I'll see if I can't track down why my modi

Re: [Jmol-users] Re: I still like Frames best..etc.

2005-08-28 Thread Bob Hanson
When I moved to abandon my own use of frames last year it was a big step. But I'll certainly never go back. Note that there is still need of s, which allow loading of an independent file into a "subsection" of a page. But now I hide those and only use them for data transfer between server and cl

Re: [Jmol-users] Re: I still like Frames best..etc.

2005-08-28 Thread Eric Martz
At 8/28/05, you wrote: Eric Martz asked: And I still don't understand why I am advised not to use frames. Let's make it clear, you can uses frames if you want ... Thank you VERY MUCH, David, for this detailed and authoritative explanation. I found it very helpful! -Eric Eric Mart

Re: [Jmol-users] documentation examples fail in IE

2005-08-28 Thread Bob Hanson
Thanks. I'll look into this. It almost certainly has to do with the way I'm writing a

Re: [Jmol-users] mozilla/mac/jmol

2005-08-28 Thread Bob Hanson
If this is the case, perhaps we are better giving unique names to our .jar files on our respective sites. Bob Daniel Kirshner wrote: I really believe the answer to this one is: empty the cache restart Safari Safari thinks there's a security violation whenever you've downloaded JmolAp

Re: [Jmol-users] Ligand selection blues

2005-08-28 Thread David Leader
Eric, At 8/2/05, you wrote: I have a feeling that this involves some hidden dictionary. I've never been clear which HETATOMs they regard as ligands. Seems arbitrarily wierd, but perhaps I'm missing something obvious. Dear David, 1. I suggest that you send inquiries about rasmol/chime to mo

[Jmol-users] Re: I still like Frames best..etc.

2005-08-28 Thread David Leader
Eric Martz asked: And I still don't understand why I am advised not to use frames. Let's make it clear, you can uses frames if you want, but you 'should not' use deprecated markup such as align=left etc in applet tags. If frames are the best way of doing your job - use frames. I have a num