Re: [Jmol-users] selecting atom IDs such as 1h47

2005-10-14 Thread Miguel
> Hello all > I have a PDB file in which some atoms have 4-character ID starting with a > number; Jmol does not allow me to select them > Example: > ATOM 1 N50 LIP 1 -22.659 21.125 -23.903 .00 . > ATOM 2 C47 LIP 1 -21.387 21.793 -24.221 .00 . > ATOM

[Jmol-users] selecting atom IDs such as 1h47

2005-10-14 Thread Angel Herraez
Hello all I have a PDB file in which some atoms have 4-character ID starting with a number; Jmol does not allow me to select them Example: ATOM 1 N50 LIP 1 -22.659 21.125 -23.903 .00 . ATOM 2 C47 LIP 1 -21.387 21.793 -24.221 .00 . ATOM 3 1H47 LIP

Re: [Jmol-users] lipid bilayer scripts

2005-10-14 Thread Angel Herraez
Hello, Adriano I did the conversion from Eric's RasMol scripts version to Chime web pages -in English and Spanish-. My plans are to translate all my web pages from Chime into Jmol, but it takes time, so this module has not been started. It should not be very difficult, but I'm still learning m

[Jmol-users] lipid bilayer scripts

2005-10-14 Thread adriano ceccarelli
Hi all, I remember a set of chime scripts illustrating the phospholipid bilayer structure, I downloaded a long time ago from one of Eric Martz pages. I wonder if anybody has converted it into jmol suitable stuff, or knows of an equivalent presentation working with jmol. Thanks for your he

[Jmol-users] "set loadCheck on"

2005-10-14 Thread Frieda Reichsman
Can Jmol look at what pdb file is currently loaded in the applet and not re-load it even though it receives a script that starts with the command to load the same file?"set LoadCheck on" was a command in Chime that told Chime to do this, so one could have a tutorial where the buttons could call dif

Re: [Jmol-users] new secondary structure assignment in Jmol

2005-10-14 Thread Bob Hanson
hhh. Very slick. This will be great, I bet. Bob -- Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107 Professor of Chemistry, St. Olaf College 1520 St. Olaf Ave., Northfield, MN 55057 mailto:[EMAIL PROTECTED] http://www.stolaf.edu/people/hansonr "Imagination is more important than knowledge

[Jmol-users] new secondary structure assignment in Jmol

2005-10-14 Thread Timothy Driscoll
hi all, with Miguel's help, I have installed a new method for assigning protein secondary structure in Jmol. it represents a first attempt, and I will be refining it greatly over the next few days/weeks. details are below. anyone interested in trying it can download and build the lates