On Jan 31, 2006, at 6:52 PM, Miguel wrote:
My main concern is that I wish to show the fully bonded lattice,
and I would appreciate any suggestions or help that people have.
I do not understand what you are asking.
Hi Miguel,
I wanted to show the lattice with bonds from calcium to carbon.
On Jan 31, 2006, at 7:51 PM, Bob Hanson wrote:
Try
load caco3.xyz
select (calcium)
connect 2.5 (oxygen)
:)
Bob
Wow, Bob! works like a charm. Thanks for spelling it out!
Frieda
Miguel wrote:
Hi all,
If you visit the following page and click on "visualize the
structure" (the fourth bul
Try
load caco3.xyz
select (calcium)
connect 2.5 (oxygen)
:)
Bob
Miguel wrote:
Hi all,
If you visit the following page and click on "visualize the
structure" (the fourth bullet), you'll see a Jmol applet pop out and
the lattice structure of CaCO3 (calcium carbonate crystal) with all
atoms sh
> On Jan 31, 2006, at 6:38 PM, Frieda Reichsman wrote:
>
>>
>> However, downloading the xyz file and opening it in Jmol.app, the
>> calcium atoms are not bound to any other atoms.
>
> I should have said that I was opening it using Jmol 10.00.46. I had
> not kept up with the list and now see 10.00
> Hi all,
>
> If you visit the following page and click on "visualize the
> structure" (the fourth bullet), you'll see a Jmol applet pop out and
> the lattice structure of CaCO3 (calcium carbonate crystal) with all
> atoms showing at least one bond to another atom.
>
> However, downloading the xyz
On Jan 31, 2006, at 6:38 PM, Frieda Reichsman wrote:However, downloading the xyz file and opening it in Jmol.app, the calcium atoms are not bound to any other atoms.I should have said that I was opening it using Jmol 10.00.46. I had not kept up with the list and now see 10.00.47 has been released.
Hi all,If you visit the following page and click on "visualize the structure" (the fourth bullet), you'll see a Jmol applet pop out and the lattice structure of CaCO3 (calcium carbonate crystal) with all atoms showing at least one bond to another atom.However, downloading the xyz file and opening i
Thanks to Bob, Angel, and Miguel for the the explanations and
suggestions! As long as there are no planned changes for centering in
future releases, I think I''ll stick to the display format I'm using
and edit those Jmol displays I've already created, taking this
post-10.00 feature into account
The non-square applet that Bob points out was my first thought when I
read David's message, but to me the applet looked pretty square --now
I see in the code that this is only by chance--. Probably the problem
is a combination of this together with Miguel´s comment about
centering: this nucleosome
David, the real problem is that you are creating a nonsquare applet. I
understand your desire -- to fit the applet to the user's browser. But
instead of that, I recommend picking the smaller of your two
dimensions, Math.min(frameWidth* .6,frameHeight* .99), and make that
both the height and wid
> I've noticed that this version seems to load molecules translated
> approx. +130% on Z (zoomed) and translated approx. +10% (down) on Y
> compared to the loads with v. 10.00.
The point used for centering changed sometime after 10.00.
In the 10.00 release the default center was the average point
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